Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 8.0e-135 483.8 252 100.0
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 6.9e-70 268.1 213 70.4
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 1.3e-68 263.8 189 73.5
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.3e-68 263.8 194 72.2
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.3e-68 263.8 180 77.8
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 2.9e-68 262.7 177 78.0
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 3.8e-68 262.3 205 67.3
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 8.5e-68 261.2 191 71.2
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 1.1e-67 260.8 175 77.7
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 1.9e-67 260.0 192 70.3
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 3.2e-67 259.2 215 65.1
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 3.2e-67 259.2 197 69.0
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 5.5e-67 258.5 205 66.3
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 9.4e-67 257.7 173 75.7
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 1.6e-66 256.9 224 62.5
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 2.7e-66 256.1 191 70.2
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.7e-66 256.1 191 70.2
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 3.6e-66 255.8 202 66.3
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 3.6e-66 255.8 207 66.7
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 4.7e-66 255.4 181 71.8
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 7.9e-66 254.6 181 72.9
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.0e-65 254.2 204 66.7
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 1.8e-65 253.4 191 69.6
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 1.8e-65 253.4 213 65.3
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 1.8e-65 253.4 207 66.2
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.3e-65 253.1 233 60.5
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.3e-65 253.1 177 75.7
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 2.3e-65 253.1 191 68.6
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 3.0e-65 252.7 200 67.5
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 3.9e-65 252.3 183 71.6
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 5.1e-65 251.9 265 55.8
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 6.7e-65 251.5 206 64.6
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 8.8e-65 251.1 195 67.7
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 8.8e-65 251.1 207 66.7
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 8.8e-65 251.1 233 60.1
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 1.5e-64 250.4 181 71.3
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 1.5e-64 250.4 230 58.7
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 2.0e-64 250.0 225 60.9
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 3.3e-64 249.2 191 68.1
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 4.4e-64 248.8 181 73.5
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 4.4e-64 248.8 203 66.5
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 5.7e-64 248.4 180 74.4
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 7.4e-64 248.1 222 60.4
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 9.7e-64 247.7 207 64.7
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 9.7e-64 247.7 189 68.8
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 1.7e-63 246.9 206 63.1
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 1.7e-63 246.9 220 60.9
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 4.8e-63 245.4 181 70.7
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 6.3e-63 245.0 178 71.3
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 6.3e-63 245.0 200 65.0
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 8.2e-63 244.6 213 63.8
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 2.4e-62 243.0 225 58.7
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 2.4e-62 243.0 187 67.9
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 2.4e-62 243.0 181 68.0
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 3.1e-62 242.7 242 57.4
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 3.1e-62 242.7 217 59.4
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 4.1e-62 242.3 190 65.8
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 5.3e-62 241.9 229 59.0
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 4.5e-61 238.8 173 72.8
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 1.0e-60 237.7 215 57.7
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 2.2e-60 236.5 176 69.9
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 3.2e-59 232.6 171 70.8
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 4.2e-59 232.3 174 67.8
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 4.2e-59 232.3 174 68.4
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 4.2e-59 232.3 177 66.7
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 4.2e-59 232.3 181 66.3
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 5.5e-59 231.9 175 67.4
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 1.2e-58 230.7 174 68.4
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 1.2e-58 230.7 177 66.1
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 1.2e-58 230.7 177 66.7
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 2.7e-58 229.6 177 66.1
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 2.7e-58 229.6 222 58.6
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 3.6e-58 229.2 174 66.7
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 3.6e-58 229.2 174 68.4
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 4.7e-58 228.8 170 69.4
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 4.7e-58 228.8 224 57.6
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 8.0e-58 228.0 170 69.4
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 1.0e-57 227.6 190 62.6
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 5.2e-57 225.3 172 67.4
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 6.7e-57 224.9 172 66.9
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 2.8e-55 219.5 195 60.5
Os10g0555200 Oryza sativa ssp. japonica HOM05D006638 ORTHO05D008246 1.6e-53 213.8 168 65.5
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 1.3e-52 210.7 225 53.3
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.7e-50 203.0 197 59.9
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 8.0e-50 201.4 192 60.9
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 9.7e-48 194.5 153 64.7
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 8.3e-47 191.4 174 59.8
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 1.4e-46 190.7 129 76.0
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 3.1e-46 189.5 155 68.4
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 9.1e-46 188.0 125 75.2
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.0e-45 186.8 126 75.4
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 3.5e-45 186.0 266 44.4
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 7.7e-45 184.9 201 55.7
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.0e-44 184.5 201 55.7
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 1.1e-43 181.0 138 65.9
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 9.4e-43 177.9 183 57.9
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 6.1e-42 175.3 149 66.4
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 8.0e-42 174.9 117 76.9
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 9.8e-40 167.9 120 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3890 Anthoceros agrestis HOM05D006638 ORTHO05D008246 1.7e-39 167.2 172 51.7
Mapoly0010s0011 Marchantia polymorpha HOM05D006638 ORTHO05D008246 2.2e-39 166.8 163 55.2
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 3.7e-39 166.0 107 78.5
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 3.3e-35 152.9 112 75.9
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 7.2e-35 151.8 128 64.8
Pp3c1_23680 Physcomitrium patens HOM05D006638 ORTHO05D008246 1.0e-33 147.9 177 47.5
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.2e-31 140.2 121 65.3
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.2e-31 140.2 97 75.3
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 3.2e-30 136.3 126 58.7
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 4.5e-29 132.5 103 67.0
SMO340G0150 Selaginella moellendorffii HOM05D006638 ORTHO05D008246 1.0e-28 131.3 145 49.0
Pp3c1_23620 Physcomitrium patens HOM05D006638 ORTHO05D008246 5.4e-22 109.0 146 45.9
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.2e-21 107.8 78 66.7
CBR_g17705 Chara braunii HOM05D006638 ORTHO05D008246 1.9e-14 84.0 106 45.3
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 1.3e-12 77.8 58 70.7
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 2.3e-09 67.0 46 67.4
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 8.9e-09 65.1 65 56.9
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 4.4e-08 62.8 68 51.5
MELO3C033920.2 Cucumis melo HOM05D006638 ORTHO05D008246 5.4e-06 55.8 99 39.4


User provided reference genes

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