Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.4e-145 519.6 271 100.0
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 8.2e-93 344.4 267 68.2
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 8.2e-93 344.4 267 67.4
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 3.1e-92 342.4 270 66.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 5.3e-92 341.7 271 66.8
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.5e-91 340.1 272 67.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.6e-91 339.3 271 69.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 3.4e-91 339.0 273 68.1
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.5e-91 338.6 270 67.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 5.9e-91 338.2 270 65.9
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 5.9e-91 338.2 270 67.8
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 5.0e-90 335.1 269 64.7
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 6.5e-90 334.7 269 64.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 8.5e-90 334.3 269 65.8
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.6e-88 330.1 270 64.1
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 2.7e-88 329.3 269 63.6
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 4.7e-88 328.6 271 64.6
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 4.7e-88 328.6 269 63.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 6.1e-88 328.2 269 63.6
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 6.1e-88 328.2 270 65.9
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 2.3e-87 326.2 272 65.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 2.3e-87 326.2 267 65.2
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 3.0e-87 325.9 270 64.4
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 6.7e-87 324.7 271 65.3
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.5e-86 323.6 270 63.7
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 2.0e-86 323.2 270 63.7
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.0e-86 323.2 269 64.3
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 3.3e-86 322.4 271 64.6
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.3e-86 322.4 269 65.8
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 9.7e-86 320.9 268 65.7
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.7e-85 320.1 270 63.0
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 4.8e-85 318.5 271 62.0
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.1e-84 317.4 271 64.2
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.8e-84 316.6 270 64.4
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 4.1e-84 315.5 273 61.2
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 5.3e-84 315.1 275 62.2
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 9.1e-84 314.3 272 62.5
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 9.1e-84 314.3 272 62.9
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 1.2e-83 313.9 276 60.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 1.2e-83 313.9 273 62.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 1.5e-83 313.5 274 60.9
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.5e-83 313.5 266 63.2
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.5e-83 313.5 259 62.5
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 2.0e-83 313.2 272 61.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.0e-83 313.2 271 60.9
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.0e-83 313.2 273 62.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 2.0e-83 313.2 271 61.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.4e-83 312.4 272 60.3
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.4e-83 312.4 271 62.4
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 3.4e-83 312.4 269 64.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 4.5e-83 312.0 268 62.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 4.5e-83 312.0 274 63.5
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 5.9e-83 311.6 274 63.5
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 2.2e-82 309.7 272 60.7
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.8e-82 308.9 272 59.9
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 5.0e-82 308.5 272 59.6
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 5.0e-82 308.5 269 63.6
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 6.5e-82 308.1 268 60.4
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 8.5e-82 307.8 279 62.0
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 8.5e-82 307.8 269 62.1
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.9e-81 306.6 287 57.5
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.9e-81 306.6 270 60.7
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.5e-81 306.2 276 61.2
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-81 305.8 277 59.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-80 303.5 277 58.8
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 8.0e-80 301.2 257 63.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.0e-80 301.2 277 57.8
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 1.0e-79 300.8 268 61.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.9e-79 298.9 277 58.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 3.9e-79 298.9 276 56.9
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 8.8e-79 297.7 312 54.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 8.8e-79 297.7 253 62.5
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.1e-78 297.4 271 60.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.5e-78 297.0 272 59.6
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 4.4e-78 295.4 273 59.0
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 1.3e-77 293.9 271 60.5
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-77 293.5 286 55.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.7e-77 293.5 274 58.4
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 4.8e-77 292.0 270 60.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 5.3e-76 288.5 267 58.8
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 9.1e-76 287.7 274 59.5
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.0e-75 286.6 221 69.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 7.7e-75 284.6 262 58.4
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.0e-74 282.0 337 48.7
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 6.5e-74 281.6 263 58.2
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 8.5e-74 281.2 267 58.4
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 3.6e-72 275.8 246 58.9
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.0e-71 274.2 244 63.1
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.4e-70 268.9 267 55.4
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.4e-68 263.1 275 51.3
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-61 240.4 244 57.0
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 3.7e-61 239.2 286 47.9
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 3.7e-61 239.2 268 47.4
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.8e-60 236.9 257 53.7
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.8e-60 236.9 244 54.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 4.1e-60 235.7 269 51.3
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.7e-58 230.3 191 64.9
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.0e-54 216.9 144 75.7
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 9.2e-52 208.0 156 69.2
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.6e-51 207.2 260 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 6.1e-48 195.3 267 41.9
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 6.1e-48 195.3 269 42.8
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 6.8e-47 191.8 195 53.3
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.2e-45 186.8 228 44.3
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 6.4e-45 185.3 200 57.0
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 3.4e-38 162.9 343 36.7
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 4.6e-35 152.5 109 78.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.3e-34 151.0 132 59.1
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.7e-34 150.6 111 75.7
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-33 147.9 118 65.3
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.3e-33 146.0 116 64.7
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 3.6e-32 142.9 108 66.7
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.1e-31 141.4 147 56.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.4e-28 130.2 132 53.8
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 4.3e-25 119.4 85 67.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.6e-24 116.3 106 57.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 4.7e-24 115.9 85 65.9
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 1.4e-23 114.4 274 31.8
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 5.2e-23 112.5 104 59.6
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.5e-22 110.9 251 30.3
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 7.6e-22 108.6 105 53.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.9e-20 104.0 73 71.2
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 5.4e-20 102.4 106 57.5
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-18 97.4 147 44.2
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 1.5e-17 94.4 68 69.1
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.9e-17 94.0 124 43.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.3e-17 92.0 56 69.6
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 9.6e-17 91.7 73 63.0
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.4e-15 87.8 69 58.0
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 6.9e-15 85.5 56 73.2
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.6e-14 83.6 79 57.0
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 4.4e-14 82.8 103 46.6
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.7e-10 70.9 82 51.2
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 2.5e-09 67.0 97 40.2


User provided reference genes

Program Settings