Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 0.0e+00 1275.0 729 100.0
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 2.9e-270 935.3 729 71.6
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 7.4e-266 920.6 729 70.9
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 7.2e-261 904.0 733 69.2
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.8e-259 899.4 729 68.9
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 1.4e-256 889.8 729 69.1
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 4.1e-256 888.3 751 67.2
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 7.0e-256 887.5 729 67.8
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.6e-255 886.3 729 68.2
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 5.9e-255 884.4 731 67.6
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.7e-254 882.9 729 67.8
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 6.1e-252 874.4 732 67.3
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.4e-251 873.2 729 67.4
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.4e-251 873.2 735 66.3
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.2e-249 865.9 758 65.8
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 4.5e-247 858.2 729 66.8
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 2.8e-244 849.0 736 65.8
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.4e-243 846.7 731 65.9
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 9.8e-242 840.5 731 66.6
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.3e-241 840.1 704 67.2
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.7e-241 839.7 816 59.9
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 3.7e-241 838.6 700 66.6
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.4e-240 836.6 731 64.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.6e-239 833.2 729 66.4
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 3.5e-239 832.0 729 64.7
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 3.3e-237 825.5 710 65.9
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 1.0e-235 820.5 731 66.5
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 3.1e-235 818.9 729 63.5
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 6.8e-235 817.8 730 64.2
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.5e-234 816.6 729 64.1
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 2.0e-234 816.2 731 65.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 2.6e-234 815.8 696 65.2
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 3.4e-234 815.5 729 64.2
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 8.3e-233 810.8 731 64.2
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.1e-232 810.4 729 63.0
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 7.0e-232 807.7 672 66.8
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 3.0e-230 802.4 733 62.2
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 3.0e-230 802.4 729 61.9
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.6e-228 796.6 729 60.8
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.6e-228 796.6 731 65.3
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 3.6e-228 795.4 728 61.1
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 1.1e-227 793.9 740 62.3
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.4e-227 793.5 730 61.6
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 6.8e-227 791.2 729 61.5
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 6.8e-227 791.2 729 62.8
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.5e-226 790.0 730 60.4
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.0e-226 789.6 733 61.7
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.4e-226 788.9 718 61.6
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 4.4e-226 788.5 733 61.5
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 9.8e-226 787.3 730 61.8
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.7e-225 786.6 730 63.6
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 2.9e-225 785.8 737 62.3
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 8.3e-225 784.3 733 61.8
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 8.3e-225 784.3 738 61.7
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.2e-224 782.3 729 60.5
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 5.4e-224 781.6 728 60.0
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 7.1e-224 781.2 729 61.6
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 4.6e-223 778.5 729 60.4
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.2e-220 770.4 729 62.0
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 1.1e-219 767.3 728 59.8
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 6.8e-219 764.6 730 60.3
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 6.8e-219 764.6 818 57.5
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 8.9e-219 764.2 729 60.8
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 3.4e-218 762.3 730 61.0
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 3.4e-218 762.3 729 59.9
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 9.9e-218 760.8 729 60.8
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 1.1e-216 757.3 730 61.5
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 5.1e-214 748.4 732 61.3
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 5.1e-214 748.4 732 61.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 1.5e-213 746.9 729 60.8
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 8.1e-212 741.1 740 58.4
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.3e-209 733.8 702 60.4
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 8.4e-209 731.1 702 60.5
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 2.1e-207 726.5 728 60.3
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.0e-206 722.6 751 56.9
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.5e-205 719.5 800 55.2
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.8e-203 713.4 673 61.1
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.9e-200 703.4 731 58.4
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 5.4e-200 701.8 700 59.4
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 2.1e-199 699.9 731 57.6
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.0e-198 697.6 730 58.6
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.8e-195 686.8 733 57.4
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 2.4e-192 676.4 701 56.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 5.1e-190 668.7 731 55.3
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 8.7e-190 667.9 674 59.5
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.5e-189 666.4 667 59.7
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 4.0e-187 659.1 781 51.5
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 2.5e-181 639.8 737 53.3
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 6.3e-172 608.6 734 51.0
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 3.0e-166 589.7 731 51.8
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 4.7e-151 539.3 593 55.0
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 2.9e-145 520.0 363 77.1
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 3.8e-145 519.6 577 53.4
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.2e-141 508.1 359 76.0
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.4e-124 449.1 299 77.9
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 5.4e-123 446.0 559 50.4
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.7e-121 441.0 437 60.4
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 8.3e-116 422.2 437 59.3
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 3.2e-115 420.2 271 81.2
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 4.7e-111 406.4 589 47.0
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 6.6e-105 386.0 378 60.3
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 4.4e-85 320.1 700 33.9
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.3e-84 318.5 343 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 9.3e-75 285.8 679 33.9
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 4.6e-74 283.5 272 59.2
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 2.5e-72 277.7 447 43.4
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.4e-67 261.9 710 29.7
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.9e-67 261.5 691 28.4
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.6e-66 258.5 523 40.5
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 3.5e-66 257.3 374 46.8
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 9.0e-62 242.7 762 28.6
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 4.6e-58 230.3 656 32.6
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.0e-32 145.2 136 61.0
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-26 123.6 84 66.7
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 9.8e-24 116.3 102 65.7
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.7e-23 114.4 144 50.7
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 2.4e-22 111.7 436 25.2
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.8e-20 104.4 109 56.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 7.5e-16 90.1 107 50.5
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 9.8e-16 89.7 251 31.5
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 9.8e-16 89.7 94 53.2
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.2e-15 88.6 217 35.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.3e-15 87.0 54 87.0
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.1e-14 86.3 103 47.6
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.1e-14 84.3 140 40.7
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 1.7e-12 79.0 118 38.1
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.9e-12 78.2 58 70.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.9e-12 78.2 124 36.3
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 7.3e-11 73.6 56 67.9
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 2.1e-10 72.0 70 54.3
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 7.5e-08 63.5 41 80.5
Rhsim13G0121700 Rhododendron simsii HOM05D003220 ORTHO05D003944 4.1e-06 57.8 52 55.8


User provided reference genes

Program Settings