Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23560 Coffea canephora HOM05D008164 ORTHO05D010222 6.8e-85 317.4 171 100.0
Dinv29630 Davidia involucrata HOM05D000112 ORTHO05D000564 4.9e-27 125.2 172 53.5
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 2.5e-23 112.8 179 48.6
CiPaw.05G001800 Carya illinoinensis HOM05D008164 ORTHO05D010222 3.3e-23 112.5 170 44.1
QL02p103286 Quercus lobata HOM05D008164 ORTHO05D010222 9.6e-23 110.9 177 49.7
Solyc01g103070.2 Solanum lycopersicum HOM05D008164 ORTHO05D010222 1.3e-22 110.5 180 49.4
Haze_09987 Corylus avellana HOM05D008164 ORTHO05D010222 1.1e-21 107.5 171 52.0
DCAR_003281 Daucus carota HOM05D008164 ORTHO05D010222 2.4e-21 106.3 168 38.7
Cfa004447 Carpinus fangiana HOM05D008164 ORTHO05D010222 4.0e-21 105.5 175 51.4
TAR628G0422 Trochodendron aralioides HOM05D008164 ORTHO05D010222 2.0e-20 103.2 164 39.0
Duzib235G0793 Durio zibethinus HOM05D008164 ORTHO05D010222 5.8e-20 101.7 173 41.6
Peaxi162Scf00011g00188 Petunia axillaris HOM05D008164 ORTHO05D010222 2.2e-19 99.8 178 49.4
Ciclev10002734m.g Citrus clementina HOM05D008164 ORTHO05D010222 3.8e-19 99.0 180 38.9
PGSC0003DMG400038752 Solanum tuberosum HOM05D008164 ORTHO05D010222 6.5e-19 98.2 171 49.7
Gohir.A05G110000 Gossypium hirsutum HOM05D008164 ORTHO05D010222 1.9e-18 96.7 180 39.4
Lj5P282T61 Lonicera japonica HOM05D008164 ORTHO05D010222 5.5e-18 95.1 186 45.7
Thecc.06G017700 Theobroma cacao HOM05D008164 ORTHO05D010222 1.2e-17 94.0 171 39.2
Gohir.D05G110300 Gossypium hirsutum HOM05D008164 ORTHO05D010222 2.7e-17 92.8 175 50.3
Gorai.009G114500 Gossypium raimondii HOM05D008164 ORTHO05D010222 2.7e-17 92.8 175 50.3
Rhsim11G0118100 Rhododendron simsii HOM05D008164 ORTHO05D010222 7.9e-17 91.3 171 47.4
Sc23g0003940 Simmondsia chinensis HOM05D008164 ORTHO05D010222 6.7e-16 88.2 174 44.8
Manes.10G108200 Manihot esculenta HOM05D008164 ORTHO05D010222 5.7e-15 85.1 168 45.8
Nitab4.5_0004668g0050 Nicotiana tabacum HOM05D008164 ORTHO05D010222 7.4e-15 84.7 161 47.8
Oeu043611.1 Olea europaea HOM05D008164 ORTHO05D010222 7.4e-15 84.7 171 46.2
Lsat_1_v5_gn_9_121861 Lactuca sativa HOM05D008164 ORTHO05D010222 1.4e-13 80.5 175 40.6
PSO017G5192 Papaver somniferum HOM05D008164 ORTHO05D010222 1.4e-13 80.5 161 35.4
PGR142G0304 Punica granatum HOM05D008164 ORTHO05D010222 3.1e-13 79.3 133 40.6
BcaC09g50889 Brassica carinata HOM05D008164 ORTHO05D010222 5.3e-13 78.6 168 36.3
C01p19540 Brassica napus HOM05D008164 ORTHO05D010222 5.3e-13 78.6 168 36.3
BolC1t01882H Brassica oleracea HOM05D008164 ORTHO05D010222 6.9e-13 78.2 168 36.3
Prupe.1G585100 Prunus persica HOM05D008164 ORTHO05D010222 9.0e-13 77.8 200 36.0
BcaNung01134 Brassica carinata HOM05D008164 ORTHO05D010222 1.2e-12 77.4 165 34.5
Sp7g22250 Schrenkiella parvula HOM05D008164 ORTHO05D010222 1.5e-12 77.0 164 32.9
Aqoxy7G02312 Aquilegia oxysepala HOM05D008164 ORTHO05D010222 2.0e-12 76.6 179 35.2
A01p15590 Brassica napus HOM05D008164 ORTHO05D010222 5.8e-12 75.1 168 35.7
BraA01t01499Z Brassica rapa HOM05D008164 ORTHO05D010222 5.8e-12 75.1 168 35.7
Potri.003G001200 Populus trichocarpa HOM05D008164 ORTHO05D010222 7.6e-12 74.7 169 45.0
Glyma.12G164000 Glycine max HOM05D008164 ORTHO05D010222 1.3e-11 73.9 169 42.0
Migut.N00863 Erythranthe guttata HOM05D008164 ORTHO05D010222 2.2e-11 73.2 174 33.3
TWI14G0748 Tripterygium wilfordii HOM05D008164 ORTHO05D010222 5.0e-11 72.0 173 42.2
TAR376G0048 Trochodendron aralioides HOM05D008164 ORTHO05D010222 1.9e-10 70.1 167 37.7
Nitab4.5_0008306g0040 Nicotiana tabacum HOM05D008164 ORTHO05D010222 2.5e-10 69.7 152 46.1
Phvul.006G221400 Phaseolus vulgaris HOM05D045043 ORTHO05D010222 4.2e-10 68.9 170 44.1
BcaC09g50645 Brassica carinata HOM05D008164 ORTHO05D010222 5.5e-10 68.6 180 32.8
C01p22560 Brassica napus HOM05D008164 ORTHO05D010222 5.5e-10 68.6 180 32.8
BolC1t02189H Brassica oleracea HOM05D008164 ORTHO05D010222 5.5e-10 68.6 180 32.8
Atru.chr6.245 Acer truncatum HOM05D008164 ORTHO05D010222 7.9e-09 64.7 196 29.6
Thhalv10026492m.g Eutrema salsugineum HOM05D008164 ORTHO05D010222 1.8e-08 63.5 160 31.2
PSO478G3084 Papaver somniferum HOM05D008164 ORTHO05D010222 6.7e-08 61.6 148 34.5
ATR0580G429 Amborella trichopoda HOM05D008164 ORTHO05D010222 1.5e-07 60.5 164 31.7
RcHm_v2.0_Chr7g0220231 Rosa chinensis HOM05D008164 ORTHO05D010222 2.5e-07 59.7 78 44.9
SGA_v2.0_scaffold8G04458 Striga asiatica HOM05D008164 ORTHO05D010222 2.5e-07 59.7 179 39.1
Cpa.g.sc173.36 Carica papaya HOM05D008164 ORTHO05D010222 4.3e-07 58.9 169 32.5
AL7G28990 Arabidopsis lyrata HOM05D008164 ORTHO05D010222 5.7e-07 58.5 165 30.9
AT4G24265 Arabidopsis thaliana HOM05D008164 ORTHO05D010222 5.7e-07 58.5 163 30.1
Cpa.g.sc173.30 Carica papaya HOM05D008164 ORTHO05D010222 5.7e-07 58.5 169 33.7
CARHR231690 Cardamine hirsuta HOM05D008164 ORTHO05D010222 9.7e-07 57.8 157 30.6
Manes.07G030300 Manihot esculenta HOM05D008164 ORTHO05D010222 9.7e-07 57.8 169 35.5
Cpa.g.sc173.26 Carica papaya HOM05D008164 ORTHO05D010222 1.3e-06 57.4 168 32.1
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 3.7e-06 55.8 158 43.7


User provided reference genes

Program Settings