Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23500 Coffea canephora HOM05D006686 ORTHO05D008463 7.6e-280 966.5 469 100.0
Dinv29673 Davidia involucrata HOM05D006686 ORTHO05D008463 1.1e-209 733.4 457 77.2
MSTRG.16472 Avicennia marina HOM05D006686 ORTHO05D008463 7.3e-206 720.7 467 71.9
TAR381G1724 Trochodendron aralioides HOM05D006686 ORTHO05D008463 1.5e-203 713.0 458 73.8
GSVIVG01023154001 Vitis vinifera HOM05D006686 ORTHO05D008463 3.2e-201 705.3 456 73.0
DCAR_022282 Daucus carota HOM05D006686 ORTHO05D008463 2.7e-200 702.2 468 72.9
Migut.B00728 Erythranthe guttata HOM05D006686 ORTHO05D008463 2.7e-200 702.2 459 72.8
CSS0008654 Camellia sinensis var. sinensis HOM05D006686 ORTHO05D008463 6.0e-200 701.0 459 73.2
HanXRQChr01g0013991 Helianthus annuus HOM05D006686 ORTHO05D008463 1.7e-199 699.5 464 72.2
Nn5g27352 Nelumbo nucifera HOM05D006686 ORTHO05D008463 1.5e-198 696.4 462 71.9
ECA236G4971 Erigeron canadensis HOM05D006686 ORTHO05D008463 7.3e-198 694.1 473 72.9
SGA_v2.0_scaffold254G45251 Striga asiatica HOM05D006686 ORTHO05D008463 7.3e-198 694.1 463 71.3
QL02p103152 Quercus lobata HOM05D006686 ORTHO05D008463 9.5e-198 693.7 465 70.8
Manes.07G028500 Manihot esculenta HOM05D006686 ORTHO05D008463 6.2e-197 691.0 456 72.4
Thecc.06G000500 Theobroma cacao HOM05D006686 ORTHO05D008463 6.2e-197 691.0 456 71.9
PGSC0003DMG402024871 Solanum tuberosum HOM05D006686 ORTHO05D008463 6.8e-196 687.6 458 72.1
COL.COLO4_26876 Corchorus olitorius HOM05D006686 ORTHO05D008463 8.9e-196 687.2 464 70.0
MBI03_g20875_MAGBIO Magnolia biondii HOM05D006686 ORTHO05D008463 2.0e-195 686.0 456 71.3
ClCG10G007390 Citrullus lanatus HOM05D006686 ORTHO05D008463 4.4e-195 684.9 464 70.3
MELO3C016473.2 Cucumis melo HOM05D006686 ORTHO05D008463 5.8e-195 684.5 464 70.7
CAN.G855.45 Capsicum annuum HOM05D006686 ORTHO05D008463 7.5e-195 684.1 460 71.1
CsaV3_3G006630 Cucumis sativus L. HOM05D006686 ORTHO05D008463 1.7e-194 682.9 464 70.5
Solyc01g103110.3 Solanum lycopersicum HOM05D006686 ORTHO05D008463 2.2e-194 682.6 458 71.2
Gohir.A10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 8.3e-194 680.6 463 69.3
Duzib235G0699 Durio zibethinus HOM05D006686 ORTHO05D008463 1.4e-193 679.9 470 69.6
Sabra01G0173400 Salix brachista HOM05D006686 ORTHO05D008463 1.9e-193 679.5 456 70.8
Cfa004450 Carpinus fangiana HOM05D006686 ORTHO05D008463 2.4e-193 679.1 464 70.9
Sopen01g045530 Solanum pennellii HOM05D006686 ORTHO05D008463 3.2e-193 678.7 458 71.0
FAN04G2541 Fragaria x ananassa HOM05D006686 ORTHO05D008463 4.1e-193 678.3 469 70.1
Potri.004G228500 Populus trichocarpa HOM05D006686 ORTHO05D008463 4.1e-193 678.3 456 71.1
Gorai.011G003800 Gossypium raimondii HOM05D006686 ORTHO05D008463 7.1e-193 677.6 463 68.7
Gohir.D10G003400 Gossypium hirsutum HOM05D006686 ORTHO05D008463 2.7e-192 675.6 463 68.5
vmacro19835 Vaccinium macrocarpon HOM05D006686 ORTHO05D008463 6.0e-192 674.5 444 72.7
FvH4_5g27990 Fragaria vesca HOM05D006686 ORTHO05D008463 7.8e-192 674.1 458 71.2
Nitab4.5_0001057g0120 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.0e-191 673.7 470 71.3
PGR042G1861 Punica granatum HOM05D006686 ORTHO05D008463 1.0e-191 673.7 443 71.8
Nitab4.5_0001129g0010 Nicotiana tabacum HOM05D006686 ORTHO05D008463 1.7e-191 672.9 464 71.1
Peaxi162Scf00011g01843 Petunia axillaris HOM05D006686 ORTHO05D008463 5.1e-191 671.4 436 74.3
MD08G1247400 Malus domestica HOM05D006686 ORTHO05D008463 6.6e-191 671.0 465 68.8
Lsat_1_v5_gn_7_75180 Lactuca sativa HOM05D006686 ORTHO05D008463 3.3e-190 668.7 459 71.7
FAN18G1657 Fragaria x ananassa HOM05D006686 ORTHO05D008463 7.3e-190 667.5 463 70.4
Prupe.1G584700 Prunus persica HOM05D006686 ORTHO05D008463 1.2e-189 666.8 486 67.3
CANSAT01G1449 Cannabis sativa HOM05D006686 ORTHO05D008463 2.1e-189 666.0 466 68.5
Ah.03g136810 Amaranthus hybridus HOM05D006686 ORTHO05D008463 3.1e-188 662.1 457 68.9
Eucgr.G00081 Eucalyptus grandis HOM05D006686 ORTHO05D008463 7.6e-187 657.5 430 73.3
PSO210G5299 Papaver somniferum HOM05D006686 ORTHO05D008463 1.7e-186 656.4 463 69.1
CDE04G2622 Ceratophyllum demersum HOM05D006686 ORTHO05D008463 4.6e-184 648.3 469 67.0
TWI59G1206 Tripterygium wilfordii HOM05D006686 ORTHO05D008463 6.0e-184 647.9 457 68.1
ATR1089G117 Amborella trichopoda HOM05D006686 ORTHO05D008463 1.7e-183 646.4 459 67.1
HPP92_005637 Vanilla planifolia HOM05D006686 ORTHO05D008463 2.5e-182 642.5 428 70.6
THA.LOC104809035 Tarenaya hassleriana HOM05D006686 ORTHO05D008463 3.3e-182 642.1 449 68.4
unitig_22.g6102 Utricularia gibba HOM05D006686 ORTHO05D008463 1.6e-181 639.8 447 70.9
EL10Ac6g14006 Beta vulgaris HOM05D006686 ORTHO05D008463 1.1e-180 637.1 483 65.0
Aa31LG3G6890 Aethionema arabicum HOM05D006686 ORTHO05D008463 4.0e-180 635.2 429 69.0
HPP92_005643 Vanilla planifolia HOM05D006686 ORTHO05D008463 5.3e-180 634.8 428 70.6
VMungo1215G3175 Vigna mungo HOM05D006686 ORTHO05D008463 4.4e-179 631.7 432 70.8
Carub.0004s0259 Capsella rubella HOM05D006686 ORTHO05D008463 1.7e-178 629.8 440 67.3
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 2.9e-178 629.0 448 68.1
Lj4g0021342 Lotus japonicus HOM05D006686 ORTHO05D008463 2.9e-178 629.0 429 69.7
AT2G23390 Arabidopsis thaliana HOM05D006686 ORTHO05D008463 4.9e-178 628.2 428 67.8
Sp6g11350 Schrenkiella parvula HOM05D006686 ORTHO05D008463 6.4e-178 627.9 440 68.4
AL4G13300 Arabidopsis lyrata HOM05D006686 ORTHO05D008463 1.1e-177 627.1 429 69.0
Lj9C281G9 Lonicera japonica HOM05D006686 ORTHO05D008463 1.1e-177 627.1 453 68.7
Sp4g17050 Schrenkiella parvula HOM05D006686 ORTHO05D008463 2.4e-177 625.9 440 68.0
arahy.Tifrunner.gnm1.ann1.A5H9W7 Arachis hypogaea HOM05D006686 ORTHO05D008463 3.2e-177 625.5 446 67.9
Thhalv10013635m.g Eutrema salsugineum HOM05D006686 ORTHO05D008463 7.8e-176 620.9 425 69.4
Glyma.07G273000 Glycine max HOM05D006686 ORTHO05D008463 3.9e-175 618.6 456 68.2
Phvul.003G075600 Phaseolus vulgaris HOM05D006686 ORTHO05D008463 3.9e-175 618.6 432 69.2
BcaB01g02944 Brassica carinata HOM05D006686 ORTHO05D008463 5.1e-175 618.2 440 67.5
Lalb_Chr07g0176791 Lupinus albus HOM05D006686 ORTHO05D008463 5.1e-175 618.2 469 66.3
BcaC01g04848 Brassica carinata HOM05D006686 ORTHO05D008463 8.7e-175 617.5 428 68.9
BolC3t15644H Brassica oleracea HOM05D006686 ORTHO05D008463 8.7e-175 617.5 428 68.9
C03p33220 Brassica napus HOM05D006686 ORTHO05D008463 4.3e-174 615.1 428 68.7
BraA03t11965Z Brassica rapa HOM05D006686 ORTHO05D008463 4.3e-174 615.1 455 66.2
RcHm_v2.0_Chr7g0220181 Rosa chinensis HOM05D006686 ORTHO05D008463 5.6e-174 614.8 363 78.5
Sed0016336 Sechium edule HOM05D006686 ORTHO05D008463 2.6e-171 605.9 364 76.6
Ca_13532_v3 Cicer arietinum L. HOM05D006686 ORTHO05D008463 7.6e-171 604.4 427 69.3
A03p27520 Brassica napus HOM05D006686 ORTHO05D008463 3.2e-169 599.0 486 61.9
SEGI_40259 Sequoiadendron giganteum HOM05D006686 ORTHO05D008463 3.2e-169 599.0 427 67.4
Os04g0442200 Oryza sativa ssp. japonica HOM05D006686 ORTHO05D008463 3.5e-168 595.5 430 66.7
Rhsim05G0116000 Rhododendron simsii HOM05D006686 ORTHO05D008463 2.3e-167 592.8 457 65.6
Psat4g001080 Pisum sativum HOM05D006686 ORTHO05D008463 1.1e-166 590.5 386 70.7
Mapoly0007s0219 Marchantia polymorpha HOM05D006686 ORTHO05D008463 5.6e-166 588.2 440 64.8
Atru.chr6.339 Acer truncatum HOM05D006686 ORTHO05D008463 7.4e-166 587.8 382 71.5
TPR.G5968 Trifolium pratense HOM05D006686 ORTHO05D008463 2.1e-165 586.3 383 72.8
Medtr4g134670 Medicago truncatula HOM05D006686 ORTHO05D008463 1.4e-164 583.6 393 71.2
Zm00001eb423040 Zea mays HOM05D006686 ORTHO05D008463 1.8e-164 583.2 466 62.2
AagrBONN_evm.TU.Sc2ySwM_362.840 Anthoceros agrestis HOM05D006686 ORTHO05D008463 3.8e-162 575.5 445 63.4
Cpa.g.sc113.25 Carica papaya HOM05D006686 ORTHO05D008463 1.2e-160 570.5 465 62.8
Ciclev10001220m.g Citrus clementina HOM05D006686 ORTHO05D008463 8.7e-159 564.3 466 61.8
Pp3c21_14930 Physcomitrium patens HOM05D006686 ORTHO05D008463 2.6e-155 552.7 431 61.0
Aqoxy5G01865 Aquilegia oxysepala HOM05D006686 ORTHO05D008463 4.5e-147 525.4 443 58.2
CiPaw.06G176300 Carya illinoinensis HOM05D006686 ORTHO05D008463 5.9e-147 525.0 329 75.1
Sc03g0004960 Simmondsia chinensis HOM05D006686 ORTHO05D008463 7.4e-142 508.1 442 59.3
SMO364G0094 Selaginella moellendorffii HOM05D006686 ORTHO05D008463 9.1e-140 501.1 376 63.0
PSO447G0166 Papaver somniferum HOM05D006686 ORTHO05D008463 9.4e-129 464.5 463 53.3
Actinidia01629 Actinidia chinensis HOM05D006686 ORTHO05D008463 2.1e-112 410.2 297 68.4
Haze_09995 Corylus avellana HOM05D006686 ORTHO05D008463 3.5e-99 366.3 213 81.2
Haze_27211 Corylus avellana HOM05D006686 ORTHO05D008463 2.8e-96 356.7 386 47.2
Cre09.g399626 Chlamydomonas reinhardtii HOM05D006686 ORTHO05D008463 4.4e-94 349.4 457 41.4
PRCOL_00000210 Prasinoderma coloniale HOM05D006686 ORTHO05D008463 1.9e-89 334.0 448 42.4
Glyma.17G001600 Glycine max HOM05D006686 ORTHO05D008463 3.3e-89 333.2 259 67.2
RcHm_v2.0_Chr7g0220471 Rosa chinensis HOM05D006686 ORTHO05D008463 9.5e-89 331.6 227 71.4
FAN08G3117 Fragaria x ananassa HOM05D006686 ORTHO05D008463 2.6e-86 323.6 270 61.1
Oeu000154.1 Olea europaea HOM05D006686 ORTHO05D008463 7.3e-81 305.4 322 53.7
AUR62032459 Chenopodium quinoa HOM05D006686 ORTHO05D008463 3.8e-69 266.5 258 51.9
CARHR293020 Cardamine hirsuta HOM05D006686 ORTHO05D008463 2.7e-67 260.4 159 73.6
Eucgr.A00755 Eucalyptus grandis HOM05D006686 ORTHO05D008463 8.4e-61 238.8 155 72.9
Nitab4.5_0004668g0030 Nicotiana tabacum HOM05D006686 ORTHO05D008463 3.2e-44 183.7 128 68.8
Haze_09994 Corylus avellana HOM05D006686 ORTHO05D008463 1.5e-41 174.9 253 41.9
CBR_g48698 Chara braunii HOM05D006686 ORTHO05D008463 1.7e-29 134.8 123 55.3
CiPaw.06G176500 Carya illinoinensis HOM05D006686 ORTHO05D008463 1.5e-25 121.7 129 48.8
Hund15396 Selenicereus undatus HOM05D006686 ORTHO05D008463 1.8e-23 114.8 73 75.3
Actinidia26190 Actinidia chinensis HOM05D006686 ORTHO05D008463 3.1e-23 114.0 70 74.3
MELO3C032221.2 Cucumis melo HOM05D006686 ORTHO05D008463 2.0e-22 111.3 80 71.2
Peaxi162Scf00011g01844 Petunia axillaris HOM05D006686 ORTHO05D008463 9.4e-20 102.4 130 48.5
Haze_05751 Corylus avellana HOM05D006686 ORTHO05D008463 2.3e-18 97.8 75 62.7
CBR_g48699 Chara braunii HOM05D006686 ORTHO05D008463 2.8e-16 90.9 89 47.2
RcHm_v2.0_Chr7g0220191 Rosa chinensis HOM05D006686 ORTHO05D008463 2.6e-09 67.8 102 41.2


User provided reference genes

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