Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 3.0e-35 151.8 106 100.0
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 9.5e-21 103.6 106 56.6
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.8e-19 97.4 108 60.2
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.2e-18 96.7 106 59.4
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.3e-17 93.2 104 54.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.2e-17 92.4 106 54.7
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 4.9e-17 91.3 106 55.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.4e-16 87.8 106 50.0
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.7e-15 85.5 106 50.9
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.5e-15 85.1 106 51.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-14 83.6 106 47.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.0e-14 83.6 106 49.1
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.7e-14 82.8 106 48.1
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.3e-14 82.4 106 49.1
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 3.0e-14 82.0 106 50.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.0e-14 82.0 106 49.1
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.9e-14 81.6 107 52.3
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 5.1e-14 81.3 106 47.2
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.6e-14 80.9 103 49.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.5e-13 79.7 106 52.8
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.9e-13 79.3 99 48.5
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.9e-13 79.3 106 50.9
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.3e-13 78.2 106 49.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.3e-13 78.2 106 49.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.6e-13 77.8 106 46.2
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 5.6e-13 77.8 106 50.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 9.5e-13 77.0 104 49.0
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.1e-12 75.9 106 51.9
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.8e-12 75.5 85 55.3
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-12 75.5 105 44.8
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-12 75.5 105 44.8
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.7e-12 74.7 81 50.6
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 8.1e-12 73.9 106 47.2
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.1e-11 73.6 96 49.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.4e-11 73.2 96 51.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.8e-11 72.8 108 45.4
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.3e-11 72.4 106 47.2
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 3.1e-11 72.0 109 51.4
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.2e-11 71.2 109 46.8
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 5.2e-11 71.2 104 44.2
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.8e-11 70.9 103 45.6
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 8.9e-11 70.5 94 48.9
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 8.9e-11 70.5 106 61.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.2e-10 70.1 106 45.3
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.2e-10 70.1 107 43.0
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.5e-10 69.7 106 50.9
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 2.0e-10 69.3 106 47.2
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 2.6e-10 68.9 106 44.3
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.4e-10 68.6 107 45.8
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 7.6e-10 67.4 107 43.0
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 7.6e-10 67.4 94 47.9
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 7.6e-10 67.4 106 63.2
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 7.6e-10 67.4 95 66.3
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 7.6e-10 67.4 97 46.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 7.6e-10 67.4 83 50.6
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.6e-10 67.4 95 43.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 9.9e-10 67.0 91 44.0
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.9e-10 67.0 102 46.1
Lsat_1_v5_gn_7_75620 Lactuca sativa HOM05D004289 ORTHO05D233411 1.3e-09 66.6 106 66.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.3e-09 66.6 106 45.3
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.7e-09 66.2 79 48.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.7e-09 66.2 107 44.9
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.7e-09 66.2 107 44.9
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.7e-09 66.2 110 45.5
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 2.2e-09 65.9 108 44.4
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.9e-09 65.5 107 44.9
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 2.9e-09 65.5 96 43.8
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.8e-09 65.1 107 43.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.8e-09 65.1 102 43.1
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.9e-09 64.7 95 47.4
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.9e-09 64.7 95 43.2
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 4.9e-09 64.7 106 42.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 6.4e-09 64.3 94 44.7
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 6.4e-09 64.3 102 42.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.4e-09 63.9 95 44.2
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 8.4e-09 63.9 95 40.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 8.4e-09 63.9 96 44.8
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.1e-08 63.5 107 43.9
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.1e-08 63.5 96 45.8
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.1e-08 63.5 100 44.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.1e-08 63.5 93 38.7
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.4e-08 63.2 100 44.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.9e-08 62.8 107 43.0
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.9e-08 62.8 103 41.7
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.9e-08 62.8 93 38.7
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.4e-08 62.4 96 41.7
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 5.4e-08 61.2 79 46.8
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.1e-08 60.8 108 45.4
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 7.1e-08 60.8 106 50.9
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 7.1e-08 60.8 102 40.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 9.2e-08 60.5 109 43.1
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 9.2e-08 60.5 99 40.4
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 2.7e-07 58.9 104 44.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.5e-07 58.5 95 40.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 4.6e-07 58.2 103 42.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 4.6e-07 58.2 109 44.0
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.0e-07 57.8 117 41.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.0e-07 57.8 106 44.3
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.0e-07 57.8 106 44.3
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.0e-06 57.0 93 54.8
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.0e-06 57.0 94 51.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 1.3e-06 56.6 95 45.3
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.3e-06 56.6 92 45.7
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.7e-06 56.2 62 53.2
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 1.7e-06 56.2 106 53.8
Dinv19426 Davidia involucrata HOM05D004289 ORTHO05D005141 1.7e-06 56.2 54 61.1
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.7e-06 56.2 107 39.3
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.3e-06 55.8 94 40.4
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.0e-06 55.5 105 42.9
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.0e-06 55.5 95 57.9
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.9e-06 55.1 106 43.4
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 5.1e-06 54.7 101 56.4
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 6.6e-06 54.3 81 43.2
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 6.6e-06 54.3 107 39.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 6.6e-06 54.3 94 39.4
Nitab4.5_0000787g0030 Nicotiana tabacum HOM05D004289 ORTHO05D005141 6.6e-06 54.3 83 66.3
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 6.6e-06 54.3 83 65.1
Actinidia26179 Actinidia chinensis HOM05D004289 ORTHO05D005141 8.6e-06 53.9 62 51.6
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 8.6e-06 53.9 105 54.3
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.6e-06 53.9 98 43.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 8.6e-06 53.9 106 34.9


User provided reference genes

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