Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23080 Coffea canephora HOM05D001047 ORTHO05D000768 9.5e-44 179.9 96 100.0
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 2.1e-11 72.4 79 54.4
Actinidia39007 Actinidia chinensis HOM05D001047 ORTHO05D000768 4.7e-11 71.2 78 53.8
Dinv07479 Davidia involucrata HOM05D001047 ORTHO05D000768 6.8e-10 67.4 79 48.1
Nn5g27879 Nelumbo nucifera HOM05D001047 ORTHO05D000768 3.4e-09 65.1 80 48.8
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 5.8e-09 64.3 82 51.2
COL.COLO4_17732 Corchorus olitorius HOM05D001047 ORTHO05D000768 7.6e-09 63.9 85 49.4
CSS0011019 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 2.2e-08 62.4 80 46.2
Thecc.02G019400 Theobroma cacao HOM05D001047 ORTHO05D000768 3.8e-08 61.6 78 50.0
Cfa004494 Carpinus fangiana HOM05D016720 ORTHO05D000768 2.4e-07 58.9 77 49.4
FAN08G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.2e-07 58.2 80 45.0
Os04g0653000 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 4.2e-07 58.2 108 38.0
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 5.4e-07 57.8 85 43.5
FvH4_5g11290 Fragaria vesca HOM05D001047 ORTHO05D000768 7.1e-07 57.4 80 43.8
FAN13G0404 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.1e-07 57.4 80 43.8
FAN18G2883 Fragaria x ananassa HOM05D001047 ORTHO05D000768 7.1e-07 57.4 80 43.8
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 7.1e-07 57.4 93 38.7
FAN04G1998 Fragaria x ananassa HOM05D001047 ORTHO05D000768 9.3e-07 57.0 80 43.8
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 9.3e-07 57.0 89 39.3
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 9.3e-07 57.0 101 37.6
SEGI_14779 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 9.3e-07 57.0 82 45.1
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 9.3e-07 57.0 89 41.6
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 1.2e-06 56.6 89 39.3
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 1.2e-06 56.6 89 40.4
Manes.07G023500 Manihot esculenta HOM05D001047 ORTHO05D000768 1.2e-06 56.6 80 48.8
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 1.2e-06 56.6 98 40.8
Rhsim05G0004700 Rhododendron simsii HOM05D001047 ORTHO05D000768 1.2e-06 56.6 96 38.5
SEGI_02697 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 1.2e-06 56.6 81 44.4
CAN.G1168.1 Capsicum annuum HOM05D001047 ORTHO05D000768 2.1e-06 55.8 91 44.0
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 2.1e-06 55.8 91 38.5
Nitab4.5_0000787g0240 Nicotiana tabacum HOM05D001047 ORTHO05D000768 2.1e-06 55.8 80 41.2
SEGI_19168 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 2.1e-06 55.8 82 45.1
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 2.7e-06 55.5 101 38.6
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 2.7e-06 55.5 103 40.8
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 2.7e-06 55.5 89 40.4
QL02p100330 Quercus lobata HOM05D016720 ORTHO05D036967 2.7e-06 55.5 80 45.0
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 2.7e-06 55.5 78 42.3
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 3.5e-06 55.1 96 39.6
Duzib150G0095 Durio zibethinus HOM05D001047 ORTHO05D000768 3.5e-06 55.1 105 40.0
Manes.16G093500 Manihot esculenta HOM05D001047 ORTHO05D000768 3.5e-06 55.1 105 38.1
Peaxi162Scf00928g00130 Petunia axillaris HOM05D001047 ORTHO05D000768 3.5e-06 55.1 84 45.2
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 3.5e-06 55.1 89 41.6
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 3.5e-06 55.1 89 41.6
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 4.6e-06 54.7 97 37.1
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 4.6e-06 54.7 97 37.1
Psat1g016520 Pisum sativum HOM05D001047 ORTHO05D000768 4.6e-06 54.7 98 39.8
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 4.6e-06 54.7 89 41.6
Zm00001eb220310 Zea mays HOM05D001047 ORTHO05D000768 4.6e-06 54.7 88 42.0
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 6.0e-06 54.3 91 37.4
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 7.8e-06 53.9 99 38.4
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 7.8e-06 53.9 87 40.2
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 7.8e-06 53.9 87 40.2
Oeu000285.1 Olea europaea HOM05D001047 ORTHO05D000768 7.8e-06 53.9 94 37.2
SGA_v2.0_scaffold21G09523 Striga asiatica HOM05D001047 ORTHO05D000768 7.8e-06 53.9 86 39.5
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 7.8e-06 53.9 100 38.0


User provided reference genes

Program Settings