Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 0.0e+00 2172.9 1097 100.0
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 0.0e+00 1708.3 1095 78.6
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 0.0e+00 1692.2 1098 76.5
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 0.0e+00 1690.6 1099 76.9
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1684.5 1082 77.4
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 0.0e+00 1679.1 1098 75.3
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 0.0e+00 1675.2 1099 75.4
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1671.8 1100 76.0
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1670.2 1099 76.5
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 0.0e+00 1664.4 1098 76.2
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 0.0e+00 1657.1 1099 76.6
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1656.7 1118 75.5
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 0.0e+00 1654.8 1100 75.6
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 0.0e+00 1652.9 1101 75.1
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 0.0e+00 1650.2 1100 75.7
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 0.0e+00 1649.8 1197 70.9
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 0.0e+00 1649.4 1100 74.7
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1649.0 1104 74.3
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 0.0e+00 1649.0 1104 74.3
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 0.0e+00 1646.3 1101 74.4
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1638.6 1102 73.9
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 0.0e+00 1635.9 1118 73.4
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1635.5 1102 73.8
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 0.0e+00 1635.2 1101 74.3
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 0.0e+00 1634.4 1107 74.9
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 0.0e+00 1634.4 1100 74.2
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 0.0e+00 1632.1 1103 74.3
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 0.0e+00 1630.9 1060 76.9
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 0.0e+00 1627.1 1120 73.1
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 0.0e+00 1625.5 1106 73.8
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 0.0e+00 1625.5 1101 73.4
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1623.6 1099 74.7
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 0.0e+00 1621.7 1101 73.1
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 0.0e+00 1619.8 1101 73.9
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 0.0e+00 1619.0 1134 71.9
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 0.0e+00 1615.5 1111 73.8
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 0.0e+00 1610.9 1103 73.3
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 0.0e+00 1606.3 1100 73.9
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 0.0e+00 1598.2 1101 73.0
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 0.0e+00 1597.8 1101 73.2
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 0.0e+00 1595.9 1216 68.8
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1595.5 1100 73.5
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 0.0e+00 1588.2 1098 72.9
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1583.5 1100 72.4
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 0.0e+00 1580.8 1103 72.3
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 0.0e+00 1580.5 1099 72.4
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 0.0e+00 1577.4 1100 71.8
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1575.5 1134 71.5
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 0.0e+00 1554.3 1102 70.9
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 0.0e+00 1548.9 1102 70.7
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 0.0e+00 1548.1 1102 70.0
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 0.0e+00 1545.0 1084 72.0
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1543.5 1102 70.1
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 0.0e+00 1542.7 1158 69.8
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 0.0e+00 1539.6 1099 70.4
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1539.2 1097 70.8
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1538.9 1100 70.1
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 0.0e+00 1538.5 1100 69.9
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 0.0e+00 1535.0 1101 69.0
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 0.0e+00 1533.5 1100 70.0
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 0.0e+00 1533.1 1107 69.9
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1531.2 1108 69.9
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1530.8 1100 70.7
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 0.0e+00 1528.8 1137 68.3
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 0.0e+00 1524.6 1100 69.3
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 0.0e+00 1522.3 1107 69.3
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 0.0e+00 1521.5 1116 69.4
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 0.0e+00 1521.1 1109 69.7
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 0.0e+00 1521.1 1108 69.6
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 0.0e+00 1521.1 1118 69.3
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1520.4 1118 69.2
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 0.0e+00 1515.7 1111 69.0
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 0.0e+00 1513.8 1128 68.5
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1513.8 1098 70.7
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1508.0 1099 69.2
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 0.0e+00 1506.1 1105 69.4
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 0.0e+00 1502.6 1100 69.6
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 0.0e+00 1499.2 1107 68.8
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 0.0e+00 1493.0 1101 68.3
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 0.0e+00 1484.9 1101 68.2
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 0.0e+00 1482.6 1110 68.4
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 0.0e+00 1481.8 1099 68.2
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 0.0e+00 1480.3 1128 67.1
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 0.0e+00 1467.6 1097 68.6
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 0.0e+00 1466.1 1104 68.4
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 0.0e+00 1461.4 1107 66.7
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 0.0e+00 1419.4 1103 65.7
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 0.0e+00 1412.1 1101 65.9
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 0.0e+00 1394.8 1100 65.0
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 0.0e+00 1391.3 1003 69.9
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 0.0e+00 1375.1 1099 63.9
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 0.0e+00 1362.1 1131 64.1
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 0.0e+00 1336.6 1113 63.4
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 0.0e+00 1331.6 1099 62.8
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 0.0e+00 1318.5 841 79.5
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1300.4 1096 62.7
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 0.0e+00 1295.8 1053 62.5
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 0.0e+00 1229.5 1047 62.7
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 0.0e+00 1212.2 1097 59.4
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 0.0e+00 1194.1 956 65.8
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 0.0e+00 1161.0 1103 54.8
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 0.0e+00 1151.7 1118 54.4
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 0.0e+00 1113.6 1128 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 0.0e+00 1101.7 1110 53.0
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.5e-310 1069.7 716 75.4
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 3.5e-299 1031.9 776 68.8
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 2.2e-298 1029.2 617 82.5
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 2.0e-283 979.5 1156 46.7
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.1e-268 930.6 653 72.7
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-259 899.8 545 80.6
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 3.1e-231 806.2 785 55.9
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 6.3e-184 649.0 1126 38.8
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 3.1e-175 620.2 672 51.0
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.2e-166 591.7 756 44.4
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.4e-159 568.2 327 82.6
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 8.3e-152 542.3 673 46.2
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.9e-148 531.2 290 86.9
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 1.3e-144 518.5 681 44.3
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.3e-144 518.5 290 84.1
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.1e-134 484.6 249 90.4
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 6.0e-126 456.4 257 83.7
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 9.3e-119 432.6 319 68.3
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 2.7e-118 431.0 240 84.2
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 4.0e-114 417.2 406 53.7
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 2.6e-113 414.5 356 60.1
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 7.1e-111 406.4 254 80.3
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 1.2e-105 389.0 261 74.7
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.2e-105 389.0 442 47.7
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 3.3e-100 370.9 322 61.5
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 3.2e-79 301.2 492 38.4
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 3.2e-71 274.6 282 51.8
Psat7g240960 Pisum sativum HOM05D003697 ORTHO05D005452 2.2e-67 261.9 214 64.0
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.7e-51 209.1 233 51.5
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 1.2e-49 203.0 167 61.1
C06p46180 Brassica napus HOM05D003697 ORTHO05D033244 1.0e-45 189.9 152 62.5
C06p46230 Brassica napus HOM05D003697 ORTHO05D033244 1.0e-45 189.9 152 62.5
Psat5g210320 Pisum sativum HOM05D003697 ORTHO05D005452 2.3e-45 188.7 103 85.4
FAN13G1565 Fragaria x ananassa HOM05D003697 ORTHO05D024366 3.5e-41 174.9 112 76.8
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.2e-38 166.4 108 74.1
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 3.6e-38 164.9 97 78.4
Lj6g0025593 Lotus japonicus HOM05D003697 ORTHO05D024366 4.7e-38 164.5 112 74.1
Psat5g210280 Pisum sativum HOM05D003697 ORTHO05D005452 8.0e-38 163.7 85 87.1
Duzib132G0723 Durio zibethinus HOM05D003697 ORTHO05D005452 1.2e-36 159.8 122 66.4
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 1.5e-36 159.5 97 77.3
Actinidia06459 Actinidia chinensis HOM05D003697 ORTHO05D003490 1.7e-35 156.0 125 64.8
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 1.7e-35 156.0 149 54.4
unitig_749.g14125 Utricularia gibba HOM05D003697 ORTHO05D005452 7.0e-34 150.6 102 73.5
Psat5g201760 Pisum sativum HOM05D003697 ORTHO05D023078 1.0e-32 146.7 144 48.6
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.4e-29 136.3 87 79.3
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.0e-29 134.8 87 78.2
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 5.2e-29 134.4 87 78.2
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 6.8e-29 134.0 87 78.2
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.9e-29 133.7 87 77.0
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 8.9e-29 133.7 87 78.2
Psat0s5727g0040 Pisum sativum HOM05D003697 ORTHO05D033244 8.9e-29 133.7 115 56.5
Psat1g065720 Pisum sativum HOM05D003697 ORTHO05D002190 4.4e-28 131.3 113 56.6
BraA07t30719Z Brassica rapa HOM05D003697 ORTHO05D005452 5.8e-28 131.0 86 73.3
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.5e-28 130.6 87 77.0
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 7.5e-28 130.6 87 77.0
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-27 129.0 87 75.9
Psat5g078760 Pisum sativum HOM05D002636 ORTHO05D003490 2.7e-25 122.1 111 55.0
Psat0s625g0080 Pisum sativum HOM05D001068 ORTHO05D002190 1.1e-23 116.7 115 52.2
Psat3g186600 Pisum sativum HOM05D003697 ORTHO05D005452 4.3e-23 114.8 60 81.7
Psat1g055240 Pisum sativum HOM05D003697 ORTHO05D023078 5.6e-23 114.4 183 36.6
A07p30820 Brassica napus HOM05D003697 ORTHO05D005452 1.1e-21 110.2 54 88.9
Psat6g132920 Pisum sativum HOM05D003697 ORTHO05D005452 2.3e-16 92.4 66 63.6
Psat0s4378g0040 Pisum sativum HOM05D012210 ORTHO05D005452 2.5e-15 89.0 57 71.9
Psat1g073840 Pisum sativum HOM05D012210 ORTHO05D005452 7.3e-15 87.4 48 79.2
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 4.4e-12 78.2 59 69.5
Psat3g096360 Pisum sativum HOM05D003697 ORTHO05D323777 1.6e-09 69.7 36 80.6
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.7e-08 66.2 47 66.0
Cpa.g.sc791.3 Carica papaya HOM05D003697 ORTHO05D005452 1.5e-07 63.2 79 50.6
Psat1g072720 Pisum sativum HOM05D003697 ORTHO05D005452 1.9e-07 62.8 31 83.9
Psat6g235600 Pisum sativum HOM05D012210 ORTHO05D005452 1.9e-07 62.8 31 83.9
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.5e-07 62.4 59 55.9
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 9.6e-07 60.5 80 41.2
C06p35720 Brassica napus HOM05D003697 ORTHO05D024366 1.6e-06 59.7 85 47.1
BolC6t38695H Brassica oleracea HOM05D003697 ORTHO05D024366 1.6e-06 59.7 85 47.1
Medtr1g089820 Medicago truncatula HOM05D000488 ORTHO05D000347 3.6e-06 58.5 198 27.8
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 3.6e-06 58.5 76 38.2


User provided reference genes

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