Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 4.0e-262 907.5 444 100.0
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 6.8e-145 518.1 405 64.4
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 2.7e-141 506.1 417 61.2
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 2.9e-140 502.7 415 61.0
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 4.3e-139 498.8 418 62.4
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 2.8e-138 496.1 409 60.9
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 6.1e-138 495.0 407 61.2
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 2.3e-137 493.0 417 60.2
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 4.0e-137 492.3 409 60.4
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 4.0e-137 492.3 413 59.8
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.2e-136 490.7 410 60.7
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 3.7e-135 485.7 408 60.3
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.2e-133 480.7 411 60.3
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 2.0e-133 479.9 421 58.0
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 2.7e-133 479.6 403 60.3
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 1.7e-132 476.9 408 61.0
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 7.3e-131 471.5 416 59.6
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 1.2e-130 470.7 408 60.5
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 2.8e-130 469.5 423 58.2
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 3.6e-130 469.2 412 55.8
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 4.0e-129 465.7 416 57.9
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 5.2e-129 465.3 412 59.0
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 6.8e-129 464.9 419 58.7
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.8e-129 464.9 422 57.1
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 3.4e-128 462.6 408 58.8
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 7.5e-128 461.5 409 58.4
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.9e-127 459.5 416 58.2
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 8.3e-127 458.0 409 59.2
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 1.9e-126 456.8 407 58.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 3.2e-126 456.1 404 59.2
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 4.1e-126 455.7 415 58.3
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.1e-125 453.4 409 57.7
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 2.7e-125 453.0 411 57.9
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 2.7e-125 453.0 411 57.2
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.0e-124 451.1 409 57.7
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 6.6e-124 448.4 427 56.0
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 8.6e-124 448.0 431 54.1
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 8.6e-124 448.0 407 58.0
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 1.5e-123 447.2 431 55.0
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 5.6e-123 445.3 428 55.1
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.2e-122 444.1 412 57.0
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 3.6e-122 442.6 433 52.2
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 1.1e-121 441.0 431 54.5
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.1e-121 441.0 407 57.2
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 1.8e-121 440.3 407 55.3
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 5.2e-121 438.7 409 56.7
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.3e-119 434.1 410 56.6
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 1.3e-119 434.1 415 56.1
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 8.3e-119 431.4 416 56.2
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 4.1e-118 429.1 410 54.9
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 9.2e-118 427.9 410 56.3
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 1.2e-117 427.6 515 48.0
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 7.8e-117 424.9 407 56.0
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.0e-116 424.5 428 54.4
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 2.3e-116 423.3 427 54.6
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 3.3e-115 419.5 403 54.3
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 5.6e-115 418.7 388 56.2
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 4.0e-113 412.5 415 52.0
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 5.2e-113 412.1 419 53.9
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 8.9e-113 411.4 366 57.4
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 1.2e-112 411.0 441 52.4
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.3e-111 407.5 350 58.0
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 1.7e-111 407.1 410 54.4
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 1.7e-111 407.1 408 52.7
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 2.2e-111 406.8 411 54.3
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 6.4e-111 405.2 410 53.9
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 4.2e-110 402.5 412 53.2
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 3.5e-109 399.4 403 53.6
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 6.0e-109 398.7 411 51.8
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 6.0e-109 398.7 413 52.8
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 3.0e-108 396.4 410 50.5
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 3.9e-108 396.0 413 52.5
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 3.9e-108 396.0 413 52.8
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 1.9e-107 393.7 414 51.9
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.9e-107 393.7 406 53.0
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 1.9e-107 393.7 422 50.9
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 4.3e-107 392.5 349 55.9
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 7.3e-107 391.7 411 51.3
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 7.3e-107 391.7 412 51.5
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 1.3e-106 391.0 417 51.8
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 1.4e-105 387.5 410 53.4
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 1.8e-105 387.1 366 56.3
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 4.4e-104 382.5 398 52.0
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 2.9e-103 379.8 412 51.5
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 5.4e-102 375.6 424 49.8
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 7.1e-102 375.2 426 49.5
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 2.7e-101 373.2 384 54.2
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 7.8e-101 371.7 433 49.4
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 1.8e-97 360.5 357 54.3
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 3.8e-95 352.8 410 50.2
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 9.3e-94 348.2 328 56.7
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 2.1e-93 347.1 425 45.2
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 2.3e-92 343.6 358 53.4
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 6.9e-89 332.0 498 42.6
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.8e-81 307.4 324 51.2
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.3e-79 301.2 431 45.2
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 6.5e-79 298.9 324 50.6
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 5.5e-78 295.8 312 53.2
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.2e-77 294.7 289 53.6
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 6.7e-76 288.9 315 49.8
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 5.3e-73 279.3 349 46.1
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 1.2e-69 268.1 378 44.7
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 3.3e-67 260.0 281 50.9
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 3.3e-59 233.4 311 44.7
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 4.5e-56 223.0 165 64.2
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 1.7e-55 221.1 317 46.1
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 6.5e-55 219.2 275 45.8
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 6.5e-55 219.2 394 37.3
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 4.2e-54 216.5 412 34.2
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 2.1e-53 214.2 369 38.2
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 2.3e-52 210.7 274 42.7
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 1.1e-51 208.4 263 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 2.0e-51 207.6 464 33.0
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 2.8e-50 203.8 451 33.7
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 1.1e-49 201.8 265 44.2
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 4.8e-42 176.4 219 46.1
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.0e-35 154.5 88 77.3
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 4.4e-35 153.3 96 72.9
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.7e-34 151.4 88 75.0
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 6.3e-34 149.4 94 72.3
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 4.1e-33 146.7 78 82.1
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.6e-32 144.8 242 38.4
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 4.5e-32 143.3 376 29.5
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 4.7e-29 133.3 82 72.0
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.8e-28 129.4 198 42.9
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.2e-27 128.6 588 24.1
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 3.3e-22 110.5 201 39.8
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 9.5e-22 109.0 163 42.3
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 9.5e-22 109.0 103 56.3
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 2.8e-21 107.5 450 25.1
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 6.2e-21 106.3 164 37.2
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.8e-20 104.8 55 81.8
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 6.4e-18 96.3 168 38.7
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 4.0e-12 77.0 149 34.9
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 3.4e-11 73.9 114 40.4
Actinidia28221 Actinidia chinensis HOM05D005563 ORTHO05D006667 8.6e-07 59.3 86 41.9
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 4.3e-06 57.0 59 50.8


User provided reference genes

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