Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 2.2e-71 272.3 150 100.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-49 198.7 150 75.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 4.0e-49 198.4 150 76.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.0e-48 196.1 150 75.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.0e-48 196.1 150 75.3
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.4e-48 195.3 150 74.0
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 4.4e-48 194.9 150 72.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-47 193.0 150 73.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 2.9e-47 192.2 150 71.3
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.4e-47 191.0 150 72.0
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 8.4e-47 190.7 150 71.3
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 8.4e-47 190.7 150 72.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.9e-46 189.5 150 70.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.4e-46 189.1 148 71.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-46 189.1 150 71.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.4e-46 189.1 150 71.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.4e-46 189.1 150 72.0
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 2.4e-46 189.1 150 71.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 4.2e-46 188.3 152 71.1
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 5.4e-46 188.0 150 69.3
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 7.1e-46 187.6 150 70.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 9.3e-46 187.2 150 67.3
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 9.3e-46 187.2 150 70.0
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.2e-45 186.8 150 68.7
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.6e-45 186.4 150 68.7
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.6e-45 186.4 150 70.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 2.1e-45 186.0 151 68.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.7e-45 185.7 151 68.9
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 3.5e-45 185.3 150 70.0
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 3.5e-45 185.3 149 69.1
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 6.0e-45 184.5 151 68.2
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.0e-44 183.7 150 70.0
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.3e-44 183.3 150 67.3
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.3e-44 183.3 150 68.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-44 182.6 141 70.2
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.0e-44 182.2 150 67.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.1e-44 181.4 142 69.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 5.1e-44 181.4 150 68.7
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.7e-44 180.6 146 67.1
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.1e-43 180.3 150 66.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.5e-43 179.9 146 69.2
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.9e-43 179.5 141 68.8
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.3e-43 178.7 137 71.5
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 3.3e-43 178.7 155 65.8
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.6e-43 177.9 150 66.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 5.6e-43 177.9 150 66.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 7.3e-43 177.6 145 66.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 9.6e-43 177.2 150 66.0
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.3e-42 176.8 132 74.2
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.3e-42 176.8 142 68.3
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.1e-42 176.0 152 68.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.6e-42 175.3 141 68.1
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.1e-42 174.1 150 63.3
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.1e-41 173.7 150 66.7
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.4e-41 173.3 152 63.8
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.4e-41 173.3 150 66.0
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.3e-41 171.4 150 66.7
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 6.9e-41 171.0 150 64.0
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.9e-40 167.2 146 59.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 4.9e-39 164.9 141 67.4
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.9e-39 164.9 150 66.7
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.2e-38 161.8 150 62.0
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-37 159.8 121 71.1
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.7e-37 159.1 150 61.3
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.8e-36 156.4 150 60.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.5e-35 153.3 150 60.7
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.3e-34 150.2 137 58.4
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.6e-34 149.8 119 68.9
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.8e-34 148.3 150 60.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.2e-34 147.9 137 62.8
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.1e-34 147.5 150 58.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.1e-34 147.5 150 58.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.8e-33 146.4 122 70.5
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.4e-33 146.0 150 59.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-33 145.6 121 69.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.1e-33 145.6 151 58.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.1e-33 145.6 151 58.3
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.3e-33 144.8 151 57.6
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.9e-33 144.4 121 69.4
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.9e-33 144.4 121 69.4
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.9e-33 144.4 114 65.8
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 6.9e-33 144.4 150 62.7
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.2e-32 143.7 150 59.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.5e-32 143.3 150 60.0
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.0e-32 142.9 150 56.7
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.0e-32 142.9 150 59.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.6e-32 142.5 129 61.2
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.4e-32 142.1 118 64.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 5.8e-32 141.4 150 58.7
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 7.6e-32 141.0 150 59.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 58.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 58.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 58.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 59.3
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 9.9e-32 140.6 150 58.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.3e-31 140.2 150 58.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.3e-31 140.2 150 58.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-31 139.8 116 69.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.7e-31 139.8 150 56.7
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 4.9e-31 138.3 150 56.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 6.4e-31 137.9 154 53.2
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 6.4e-31 137.9 150 57.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 6.4e-31 137.9 150 56.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 8.4e-31 137.5 121 66.9
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-30 136.7 112 68.8
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.9e-30 136.3 150 57.3
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 7.1e-30 134.4 151 53.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.8e-28 129.8 125 56.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.3e-28 129.4 145 48.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 5.1e-28 128.3 112 61.6
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 5.1e-28 128.3 151 54.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.3e-27 125.6 151 55.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 9.6e-27 124.0 111 61.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 9.6e-27 124.0 151 55.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 6.9e-25 117.9 152 51.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.2e-23 112.8 150 43.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.0e-21 104.8 79 68.4
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.3e-20 103.6 95 62.1
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.8e-20 103.2 92 66.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.3e-18 97.1 90 57.8
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-18 95.9 103 55.3
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.4e-17 93.6 89 59.6
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.1e-17 92.4 121 49.6
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.3e-17 91.7 103 53.4
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 6.5e-15 84.7 76 64.5
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 8.5e-15 84.3 61 75.4
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.2e-13 80.5 77 62.3
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.6e-13 78.6 56 75.0
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 6.7e-12 74.7 92 55.4
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.8e-10 68.6 133 43.6
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.8e-10 68.6 133 43.6
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-09 67.0 69 53.6
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.4e-09 67.0 135 36.3
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.5e-07 58.2 69 52.2
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 7.2e-06 54.7 130 32.3


User provided reference genes

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