Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.4e-245 852.4 420 100.0
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.4e-200 703.0 420 80.2
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.4e-195 686.4 420 78.3
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 5.2e-195 684.5 420 77.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.3e-193 679.9 420 77.6
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.7e-193 678.3 420 77.6
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 77.6
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.9e-189 666.0 420 76.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 7.2e-189 664.1 420 75.5
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.2e-188 663.3 420 75.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 3.0e-187 658.7 420 74.5
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.2e-186 656.8 420 73.1
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.2e-186 656.8 420 74.0
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 3.4e-186 655.2 420 73.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.5e-186 654.1 420 73.6
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.7e-185 652.9 420 73.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.7e-185 652.9 420 73.6
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 6.3e-185 651.0 420 74.0
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.4e-184 649.8 420 75.5
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 3.1e-184 648.7 420 73.8
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 4.5e-183 644.8 420 73.6
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 5.9e-183 644.4 421 73.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 5.0e-182 641.3 420 72.6
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 6.6e-182 641.0 420 74.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.3e-181 638.6 408 75.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 71.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 71.0
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 71.2
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 7.3e-181 637.5 419 72.6
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 9.5e-181 637.1 420 71.2
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 71.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.8e-179 632.9 420 71.4
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.8e-179 632.9 420 71.4
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.8e-179 632.9 420 72.4
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 8.9e-179 630.6 407 73.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 71.4
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.0e-178 629.4 420 70.5
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.0e-178 629.4 421 73.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.4e-178 628.2 420 71.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.5e-178 627.5 421 70.5
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.5e-178 627.5 420 71.4
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 9.8e-178 627.1 420 70.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 71.7
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 71.9
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 71.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.2e-177 625.9 420 69.5
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 71.4
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 71.9
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.9e-177 625.5 420 71.9
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.9e-177 624.8 420 70.7
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 6.4e-177 624.4 420 70.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.8e-176 622.9 420 71.4
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 4.1e-176 621.7 417 69.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 5.4e-176 621.3 420 69.5
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.5e-175 618.6 420 68.8
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.5e-175 618.6 420 69.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 5.9e-175 617.8 420 70.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 5.9e-175 617.8 420 69.5
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 71.0
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 69.0
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.3e-173 611.7 420 70.0
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.6e-172 609.8 420 68.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.1e-172 609.4 405 71.9
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.1e-172 609.4 420 67.9
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 6.2e-172 607.8 420 68.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.8e-171 606.3 421 69.1
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.1e-171 605.5 420 69.3
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-171 604.4 420 68.8
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.8e-171 604.4 425 68.5
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 8.9e-171 604.0 420 68.6
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.0e-170 602.8 425 68.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 4.4e-170 601.7 423 69.5
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 2.9e-169 599.0 420 67.1
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.9e-169 598.2 421 70.5
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 4.9e-169 598.2 424 69.6
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.4e-168 596.7 419 67.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-167 593.2 420 68.1
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.0e-167 592.8 421 68.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 6.0e-167 591.3 420 68.3
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.7e-166 589.7 421 67.9
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.7e-166 589.7 425 66.8
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 6.6e-166 587.8 425 66.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 8.6e-166 587.4 420 66.9
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 9.5e-165 583.9 420 67.1
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.1e-163 580.5 421 69.6
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.8e-163 579.7 423 68.3
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.3e-163 579.3 421 69.1
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 3.1e-163 578.9 422 68.5
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.0e-163 578.6 421 66.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.8e-162 574.7 420 67.4
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 4.9e-161 571.6 420 64.0
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.2e-159 567.0 421 66.0
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.3e-158 563.5 377 69.2
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.9e-157 559.7 421 67.5
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.5e-157 559.3 422 63.3
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 63.8
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 8.9e-155 550.8 420 62.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 2.0e-154 549.7 420 63.3
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 5.8e-154 548.1 420 62.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.3e-153 547.0 420 61.9
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.2e-153 546.2 420 61.4
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.2e-153 546.2 420 61.9
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 61.9
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 61.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 61.9
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 61.4
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 4.6e-151 538.5 420 61.0
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 6.6e-150 534.6 420 59.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.4e-147 526.2 420 60.0
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 3.9e-142 508.8 421 57.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 3.9e-142 508.8 357 72.3
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 3.3e-141 505.8 420 56.7
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 1.6e-140 503.4 425 58.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.6e-140 502.3 421 57.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.5e-130 468.8 405 57.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 4.9e-129 465.3 425 55.3
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.6e-124 450.3 425 54.1
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 6.7e-118 428.3 251 81.3
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 7.4e-117 424.9 403 50.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.8e-115 420.2 325 63.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.9e-112 410.2 422 50.5
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 3.1e-107 392.9 282 65.6
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 2.9e-97 359.8 302 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.4e-94 350.9 374 46.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.4e-94 350.9 414 45.4
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.0e-89 334.7 345 49.9
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 9.7e-85 318.2 256 60.9
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 5.9e-74 282.3 317 44.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.7e-60 236.5 266 48.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 6.0e-58 229.2 134 78.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 8.1e-47 192.2 130 73.1
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 4.9e-44 183.0 161 57.1
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-34 151.4 97 73.2
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 6.2e-31 139.4 89 73.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.1e-25 119.8 72 75.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 6.6e-25 119.4 100 59.0
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-24 118.6 69 76.8
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.6e-23 113.6 69 75.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-22 109.8 69 73.9
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-22 109.8 69 73.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-20 105.1 104 51.9
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.3e-09 67.8 276 26.8
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 1.5e-08 65.1 376 22.3
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.5e-08 65.1 276 26.4
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.5e-08 64.3 246 25.2
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.6e-07 61.6 420 21.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.7e-07 60.5 76 47.4
CBR_g26097 Chara braunii HOM05D019043 ORTHO05D020397 6.2e-07 59.7 201 27.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.4e-06 58.5 239 25.1
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-06 58.2 239 25.1
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-06 58.2 239 25.1
Migut.E01649 Erythranthe guttata HOM05D005930 ORTHO05D003423 5.3e-06 56.6 112 33.9


User provided reference genes

Program Settings