Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 9.6e-229 796.6 431 100.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 5.7e-165 584.7 429 75.8
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.6e-162 576.6 430 75.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 7.2e-160 567.8 436 73.2
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 8.9e-158 560.8 428 73.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.6e-157 559.3 429 73.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.5e-152 542.7 430 72.8
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 8.9e-150 534.3 434 71.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.5e-149 533.5 436 71.3
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.4e-149 532.3 452 70.4
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.7e-148 530.0 428 72.4
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.4e-147 526.9 432 70.4
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.4e-147 526.9 433 71.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.4e-147 526.2 426 70.2
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.2e-146 523.9 429 70.9
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.0e-146 521.5 434 70.0
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.3e-145 520.4 416 70.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.0e-145 519.2 426 69.2
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 3.9e-145 518.8 433 70.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.0e-145 518.5 494 63.0
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.5e-144 516.2 434 69.8
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.5e-144 516.2 434 69.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 5.6e-144 515.0 460 66.3
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.3e-144 514.6 434 69.6
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.1e-143 513.1 435 70.1
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 6.2e-143 511.5 426 70.4
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.0e-143 511.1 435 69.0
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.1e-142 510.8 429 69.2
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.4e-142 510.4 425 70.4
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.0e-141 506.5 415 71.3
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 5.8e-141 505.0 433 67.7
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.5e-141 504.6 434 67.7
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.4e-139 500.4 428 67.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 2.4e-139 499.6 449 65.5
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 3.2e-139 499.2 432 67.4
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 5.4e-139 498.4 427 68.9
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 7.0e-139 498.0 431 68.4
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 9.2e-139 497.7 432 67.1
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.8e-138 494.6 433 68.1
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 5.1e-137 491.9 419 67.5
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.1e-136 490.7 432 66.7
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.1e-136 490.7 472 63.3
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 4.7e-135 485.3 428 67.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.1e-134 484.2 434 66.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.8e-134 483.4 431 66.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 4.0e-134 482.3 416 68.5
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.4e-133 479.2 423 66.9
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.1e-131 472.2 431 66.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.2e-130 470.7 434 65.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.7e-130 469.5 434 65.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-130 469.5 428 65.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.5e-130 469.2 415 67.2
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.0e-130 468.4 428 65.2
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.8e-130 468.0 430 66.0
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.3e-129 467.2 436 66.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.7e-129 466.8 426 65.3
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 2.5e-128 463.0 430 67.7
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 7.3e-128 461.5 427 66.3
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.2e-127 460.7 427 67.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.6e-127 460.3 423 66.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 8.1e-127 458.0 431 65.2
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 8.9e-126 454.5 413 65.6
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.6e-125 453.0 410 66.3
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.6e-125 453.0 425 66.1
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.8e-125 451.8 429 64.6
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.6e-125 451.4 439 64.2
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 2.9e-124 449.5 429 65.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.8e-124 449.1 374 69.0
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.2e-123 445.7 433 61.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.0e-122 441.8 433 66.1
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-120 437.2 425 62.6
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.9e-120 436.8 426 64.1
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.3e-119 434.1 420 61.9
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.1e-119 433.3 379 68.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.4e-118 430.6 440 63.0
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-118 430.3 429 62.0
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 7.6e-117 424.9 424 62.0
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 2.9e-116 422.9 424 61.1
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.9e-116 422.2 447 59.3
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.9e-116 422.2 380 68.4
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.1e-115 421.0 455 58.5
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.9e-115 420.2 418 61.5
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 2.4e-115 419.9 421 60.8
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 2.4e-115 419.9 413 62.7
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 2.7e-114 416.4 436 60.8
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 6.0e-114 415.2 413 62.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.1e-113 412.1 301 77.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 5.6e-112 408.7 422 59.2
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.1e-111 406.8 414 64.0
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.1e-111 406.8 377 63.9
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 3.4e-109 399.4 286 77.3
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.9e-108 396.4 420 57.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 3.8e-108 396.0 459 55.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 4.9e-108 395.6 402 60.0
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.2e-107 392.9 424 59.2
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.6e-106 389.0 413 58.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-105 387.5 425 56.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.8e-105 387.1 428 59.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 8.7e-105 384.8 395 59.7
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.7e-105 384.8 424 58.0
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 8.7e-105 384.8 395 59.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 2.1e-103 380.2 321 67.9
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 3.1e-102 376.3 422 56.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.4e-101 372.9 266 77.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.8e-101 372.1 416 59.9
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.5e-98 362.8 365 60.8
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.8e-97 360.5 375 60.3
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 9.6e-96 354.8 404 59.4
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 1.3e-92 344.4 421 53.7
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.7e-89 331.6 433 50.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.6e-87 327.4 269 70.3
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-84 317.4 428 52.1
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.0e-81 308.1 281 65.5
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.0e-81 306.6 314 62.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.3e-79 301.2 330 57.9
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.8e-79 300.1 273 68.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 3.9e-73 279.6 272 64.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.1e-70 271.6 345 50.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-69 268.1 309 55.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 9.4e-67 258.5 273 60.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.8e-65 254.2 271 59.4
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 3.9e-65 253.1 435 46.0
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-64 250.4 285 57.9
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.7e-63 246.5 263 59.3
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 5.0e-60 236.1 199 66.3
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.5e-59 234.6 436 42.0
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.6e-58 231.1 273 55.3
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.1e-58 229.2 350 47.7
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.0e-57 228.4 276 52.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.7e-55 221.1 280 53.9
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 3.1e-54 216.9 177 70.6
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.1e-51 208.4 445 39.1
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.4e-49 201.4 475 38.5
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 5.4e-46 189.5 190 60.5
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 7.7e-45 185.7 143 69.9
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.3e-44 184.9 144 69.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.9e-44 183.7 195 59.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 6.8e-41 172.6 129 72.9
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.2e-40 171.8 411 38.9
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-39 166.8 155 58.1
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.4e-38 162.9 148 62.8
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.2e-34 151.8 147 60.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 4.7e-26 123.2 572 30.6
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.5e-19 100.9 133 51.9
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 3.2e-14 84.0 230 37.4
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 7.8e-13 79.3 187 37.4
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.2e-06 57.0 120 36.7


User provided reference genes

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