Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.2e-49 199.5 98 100.0
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.9e-34 147.1 98 76.5
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.5e-33 144.4 83 85.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.5e-33 144.4 83 85.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.3e-32 142.9 82 84.1
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.9e-32 141.7 83 84.3
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 6.5e-32 140.6 97 72.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 6.5e-32 140.6 97 72.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 8.5e-32 140.2 97 71.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.4e-31 139.4 81 84.0
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.5e-31 138.7 83 81.9
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.5e-31 138.7 97 72.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.5e-31 138.7 82 81.7
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 3.2e-31 138.3 83 81.9
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 4.2e-31 137.9 83 80.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 7.2e-31 137.1 83 80.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 7.2e-31 137.1 97 71.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 7.2e-31 137.1 97 72.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 9.4e-31 136.7 97 70.1
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 9.4e-31 136.7 97 72.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.2e-30 136.3 96 74.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.6e-30 136.0 96 72.9
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.6e-30 136.0 97 71.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.6e-30 136.0 83 79.5
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.1e-30 135.6 83 79.5
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.7e-30 135.2 96 70.8
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.6e-30 134.8 83 78.3
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 3.6e-30 134.8 83 79.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.7e-30 134.4 97 70.1
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.7e-30 134.4 97 70.1
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.7e-30 134.4 83 79.5
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.7e-30 134.4 83 79.5
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 7.9e-30 133.7 97 69.1
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.4e-29 132.9 97 70.1
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.4e-29 132.9 79 81.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.4e-29 132.9 97 70.1
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.8e-29 132.5 97 68.0
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.3e-29 132.1 81 79.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.3e-29 132.1 82 80.5
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.3e-29 132.1 82 80.5
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.0e-29 131.7 97 68.0
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 3.0e-29 131.7 97 68.0
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.0e-29 131.7 97 68.0
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.0e-29 131.7 97 68.0
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.0e-29 131.7 83 75.9
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.1e-29 131.0 83 74.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 5.1e-29 131.0 83 78.3
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.7e-29 130.6 97 67.0
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.7e-29 130.6 82 79.3
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.1e-28 129.8 84 79.8
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.0e-28 129.0 81 77.8
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.0e-28 129.0 82 76.8
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.6e-28 128.6 82 76.8
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.6e-28 128.6 96 67.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.3e-28 128.3 97 66.0
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 3.3e-28 128.3 99 65.7
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 4.4e-28 127.9 77 81.8
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 5.7e-28 127.5 82 75.6
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.7e-28 127.5 83 73.5
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 5.7e-28 127.5 97 64.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 5.7e-28 127.5 83 75.9
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 5.7e-28 127.5 81 79.0
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 5.7e-28 127.5 99 64.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 9.7e-28 126.7 81 74.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 9.7e-28 126.7 81 72.8
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 9.7e-28 126.7 82 74.4
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 9.7e-28 126.7 97 67.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 9.7e-28 126.7 82 76.8
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-27 126.3 81 74.1
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-27 126.3 81 74.1
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.7e-27 125.9 83 72.3
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.7e-27 125.9 82 75.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.7e-27 125.9 97 62.9
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.2e-27 125.6 82 73.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.2e-27 125.6 82 75.6
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-27 125.6 82 74.4
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.2e-27 125.6 82 74.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.8e-27 125.2 82 74.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.8e-27 125.2 82 73.2
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.7e-27 124.8 82 74.4
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.7e-27 124.8 83 74.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 6.3e-27 124.0 99 64.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 6.3e-27 124.0 77 77.9
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.3e-27 124.0 82 73.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.2e-27 123.6 82 73.2
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 8.2e-27 123.6 77 79.2
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.1e-26 123.2 90 68.9
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.1e-26 123.2 77 80.5
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.1e-26 123.2 97 64.9
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.4e-26 122.9 82 73.2
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.4e-26 122.9 82 73.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.4e-26 122.9 82 72.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.4e-26 122.9 97 64.9
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.4e-26 122.9 97 64.9
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.8e-26 122.5 98 62.2
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.4e-26 122.1 82 73.2
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.4e-26 122.1 88 68.2
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.1e-26 121.7 82 72.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.1e-26 121.7 83 71.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.1e-26 121.7 82 74.4
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.1e-26 121.3 88 67.0
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-26 120.9 82 72.0
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 5.3e-26 120.9 98 63.3
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 5.3e-26 120.9 77 77.9
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 5.3e-26 120.9 77 77.9
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.1e-26 120.2 81 71.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 9.1e-26 120.2 83 69.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-25 119.8 82 72.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.2e-25 119.8 82 72.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-25 119.0 82 72.0
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.0e-25 119.0 98 65.3
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.0e-25 119.0 81 71.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.6e-25 118.6 81 71.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.5e-25 118.2 97 57.7
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.9e-25 117.5 77 75.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.7e-24 115.9 75 74.7
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.8e-24 114.8 97 60.8
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.5e-24 114.0 77 70.1
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 8.0e-22 107.1 69 76.8
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.3e-21 105.5 71 73.2
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.0e-21 104.8 75 68.0
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 6.7e-21 104.0 97 54.6
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 8.8e-21 103.6 72 72.2
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.3e-20 101.7 81 61.7
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.7e-19 98.2 143 44.1
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.1e-18 96.7 81 55.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 5.3e-18 94.4 81 55.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 9.1e-18 93.6 55 81.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-16 89.4 63 68.3
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 8.5e-16 87.0 81 53.1
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 5.5e-15 84.3 82 50.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.7e-14 82.0 81 49.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.7e-14 82.0 81 49.4
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 3.0e-13 78.6 46 80.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.3e-11 73.2 40 85.0
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 6.3e-11 70.9 46 76.1
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.7e-09 63.9 81 42.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 3.2e-07 58.5 34 85.3
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 7.2e-07 57.4 44 65.9


User provided reference genes

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