Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.0e-109 399.1 191 100.0
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.4e-86 323.2 188 79.8
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.3e-84 316.6 191 78.0
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 2.2e-84 315.8 191 77.5
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.9e-84 315.5 191 79.1
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 6.4e-84 314.3 188 77.7
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 8.4e-84 313.9 191 77.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.1e-83 313.5 191 77.5
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 1.9e-83 312.8 188 77.7
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.4e-83 312.4 188 76.6
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 4.1e-83 311.6 187 78.6
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 4.1e-83 311.6 191 75.9
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 7.1e-83 310.8 191 77.0
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.2e-82 310.1 188 76.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.7e-82 308.9 188 76.1
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 4.6e-82 308.1 188 75.5
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 3.0e-81 305.4 191 75.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 3.0e-81 305.4 191 75.4
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.6e-81 304.3 188 74.5
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 6.6e-81 304.3 191 72.8
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 8.6e-81 303.9 187 75.9
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.5e-80 303.1 191 75.9
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 1.9e-80 302.8 188 76.6
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.5e-80 302.4 188 75.0
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 2.5e-80 302.4 188 73.9
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.5e-80 302.4 187 72.2
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 3.3e-80 302.0 188 74.5
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 5.6e-80 301.2 188 75.0
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 7.3e-80 300.8 184 73.9
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 1.6e-79 299.7 191 73.8
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.6e-79 299.7 187 74.9
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.1e-79 299.3 188 73.4
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.1e-79 299.3 188 72.3
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 2.1e-79 299.3 187 73.8
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 3.6e-79 298.5 183 74.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.1e-78 297.0 183 74.3
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.1e-78 297.0 173 81.5
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.4e-78 296.6 187 73.8
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.4e-78 295.8 183 76.0
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 4.0e-78 295.0 183 76.0
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 8.9e-78 293.9 187 72.7
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.2e-77 293.5 187 74.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.5e-77 293.1 183 74.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 1.5e-77 293.1 187 73.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 3.4e-77 292.0 184 74.5
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 5.8e-77 291.2 187 71.7
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.9e-77 290.4 187 72.7
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.3e-76 290.0 183 74.3
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.7e-76 289.7 191 71.7
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 1.7e-76 289.7 187 72.7
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-76 289.7 187 72.7
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-76 289.7 187 72.7
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.7e-76 289.7 183 73.8
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.1e-75 284.3 177 74.0
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 7.1e-75 284.3 188 71.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.2e-74 283.5 187 71.7
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.7e-74 282.3 184 72.8
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 4.6e-74 281.6 188 68.1
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 6.0e-74 281.2 184 71.2
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.3e-73 280.0 188 68.6
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.3e-73 280.0 191 66.5
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.3e-73 279.3 187 67.9
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 3.0e-73 278.9 184 73.4
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 3.9e-73 278.5 191 64.9
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 6.6e-73 277.7 183 69.9
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.5e-72 276.6 191 66.0
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.9e-72 276.2 191 64.9
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 5.6e-72 274.6 191 63.9
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 5.6e-72 274.6 184 70.1
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 5.6e-72 274.6 191 67.0
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 9.6e-72 273.9 191 63.9
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.3e-71 273.5 184 70.7
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 1.6e-71 273.1 191 65.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 2.8e-71 272.3 191 63.9
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.6e-71 271.9 191 63.4
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 6.2e-71 271.2 191 64.4
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 6.2e-71 271.2 187 69.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 8.1e-71 270.8 191 62.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 8.1e-71 270.8 191 62.8
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.1e-70 270.4 191 62.8
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 1.8e-70 269.6 191 61.8
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 3.1e-70 268.9 188 66.5
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 6.9e-70 267.7 191 62.3
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.5e-69 266.5 187 65.2
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.5e-69 266.5 188 67.6
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.3e-68 263.5 188 62.2
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.7e-68 263.1 187 67.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.7e-68 263.1 188 64.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 7.1e-67 257.7 210 58.6
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 1.2e-66 256.9 177 66.7
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 4.6e-66 255.0 190 63.7
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 7.9e-66 254.2 181 66.3
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.3e-65 253.4 184 64.1
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 2.5e-64 249.2 183 62.8
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 5.6e-64 248.1 180 65.0
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 5.3e-62 241.5 184 58.7
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.3e-55 220.3 188 54.8
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.3e-49 199.5 218 50.0
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 6.3e-47 191.4 126 72.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.7e-44 183.3 124 66.9
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.8e-44 182.2 138 61.6
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.2e-42 177.2 188 48.9
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.2e-42 177.2 188 48.9
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.0e-41 174.1 180 46.7
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 3.0e-41 172.6 124 66.9
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 3.9e-41 172.2 188 41.5
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 6.7e-41 171.4 163 51.5
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.3e-36 157.1 112 60.7
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 2.2e-31 139.8 111 67.6
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.3e-28 130.6 97 63.9
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.9e-28 129.4 110 64.5
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.6e-26 123.6 79 69.6
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 6.3e-15 85.1 51 82.4
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 1.2e-13 80.9 52 76.9
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-11 74.3 51 68.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-09 66.6 45 68.9
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.3e-09 66.6 68 48.5
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.5e-08 63.9 83 44.6
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 3.4e-08 62.8 76 48.7
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.7e-07 60.5 90 35.6
Migut.F00246 Erythranthe guttata HOM05D002314 ORTHO05D002538 1.4e-06 57.4 161 32.3
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 4.1e-06 55.8 36 75.0
QL09p011009 Quercus lobata HOM05D002314 ORTHO05D002538 5.4e-06 55.5 161 31.7
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 7.0e-06 55.1 42 59.5


User provided reference genes

Program Settings