Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 2.4e-61 238.8 136 100.0
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 4.8e-49 198.0 153 76.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.4e-48 196.4 152 77.0
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 5.3e-48 194.5 153 75.8
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 1.2e-47 193.4 154 73.4
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 2.6e-47 192.2 153 73.9
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 1.3e-46 189.9 152 77.0
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 1.3e-46 189.9 154 74.0
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 2.2e-46 189.1 153 73.2
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.4e-45 186.4 154 73.4
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.4e-45 186.4 154 72.7
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 1.4e-45 186.4 154 72.7
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 5.4e-45 184.5 143 76.2
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 5.4e-45 184.5 149 71.1
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 9.3e-45 183.7 148 72.3
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 6.0e-44 181.0 154 69.5
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 1.8e-43 179.5 153 73.2
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.3e-43 179.1 153 72.5
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 2.3e-43 179.1 159 71.1
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.3e-43 179.1 150 73.3
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 3.0e-43 178.7 144 72.2
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 3.0e-43 178.7 144 72.2
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 5.1e-43 177.9 153 71.2
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 6.7e-43 177.6 148 71.6
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 6.7e-43 177.6 153 72.5
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 8.7e-43 177.2 152 70.4
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 1.1e-42 176.8 148 70.3
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 1.5e-42 176.4 148 70.9
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 1.9e-42 176.0 148 69.6
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 2.5e-42 175.6 149 71.1
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 2.5e-42 175.6 154 70.8
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 3.3e-42 175.3 148 70.3
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 4.3e-42 174.9 150 70.0
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 4.3e-42 174.9 150 70.0
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 5.6e-42 174.5 150 66.7
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 7.4e-42 174.1 153 69.3
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.6e-42 173.7 150 69.3
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 9.6e-42 173.7 140 72.1
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 1.3e-41 173.3 147 70.7
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 1.6e-41 172.9 155 66.5
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 1.6e-41 172.9 171 64.9
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 1.6e-41 172.9 153 70.6
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 2.1e-41 172.6 154 67.5
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 2.1e-41 172.6 147 68.0
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 2.1e-41 172.6 149 67.8
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.8e-41 172.2 150 68.7
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.8e-41 172.2 150 68.7
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 2.8e-41 172.2 148 70.3
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 3.7e-41 171.8 143 70.6
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 3.7e-41 171.8 144 70.8
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 3.7e-41 171.8 153 69.9
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 4.8e-41 171.4 147 66.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 8.1e-41 170.6 155 65.2
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 1.1e-40 170.2 147 66.7
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.1e-40 170.2 148 68.9
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 1.4e-40 169.9 150 67.3
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 2.4e-40 169.1 138 71.0
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 5.3e-40 167.9 145 69.7
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 6.9e-40 167.5 151 66.2
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 6.9e-40 167.5 130 74.6
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.2e-39 166.8 144 67.4
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 1.2e-39 166.8 150 66.0
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 1.2e-39 166.8 144 70.1
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 1.2e-39 166.8 144 70.1
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 2.0e-39 166.0 151 65.6
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 4.5e-39 164.9 146 67.1
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 4.5e-39 164.9 151 65.6
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 5.8e-39 164.5 151 65.6
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 5.8e-39 164.5 148 66.9
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 7.6e-39 164.1 150 66.0
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 7.6e-39 164.1 150 65.3
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 7.6e-39 164.1 150 66.0
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 7.6e-39 164.1 150 66.0
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 9.9e-39 163.7 149 68.5
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.3e-38 163.3 148 66.9
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 2.2e-38 162.5 150 65.3
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 2.9e-38 162.2 150 66.0
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 3.8e-38 161.8 150 65.3
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 4.9e-38 161.4 150 65.3
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 6.4e-38 161.0 153 63.4
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.9e-37 159.5 148 65.5
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 2.4e-37 159.1 150 64.7
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 4.2e-37 158.3 155 61.9
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 4.2e-37 158.3 150 64.0
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 5.5e-37 157.9 148 64.9
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 2.7e-36 155.6 129 72.9
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.0e-35 153.7 148 64.2
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 2.3e-35 152.5 225 49.8
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.1e-34 150.2 143 62.2
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 1.9e-34 149.4 147 61.9
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 4.3e-34 148.3 140 62.1
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.4e-32 143.3 139 61.2
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 4.5e-31 138.3 152 61.2
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.3e-30 136.7 148 58.8
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 1.7e-30 136.3 147 58.5
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.9e-29 132.9 148 58.8
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 3.2e-29 132.1 150 54.7
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 5.5e-29 131.3 148 59.5
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.5e-26 123.2 92 75.0
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 1.3e-25 120.2 111 65.8
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.6e-25 119.8 110 66.4
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 3.7e-25 118.6 148 49.3
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 6.3e-25 117.9 140 54.3
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 6.3e-25 117.9 119 62.2
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 1.1e-24 117.1 137 50.4
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 1.4e-24 116.7 148 53.4
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 9.0e-24 114.0 81 80.2
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 1.3e-22 110.2 131 58.8
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.3e-22 110.2 138 46.4
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 3.8e-22 108.6 109 65.1
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 8.5e-22 107.5 119 58.8
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 4.2e-21 105.1 147 51.7
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 4.2e-21 105.1 114 61.4
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 6.1e-20 101.3 171 47.4
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 8.8e-19 97.4 108 58.3
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 1.1e-18 97.1 118 55.1
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.9e-18 96.3 154 48.1
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 1.4e-16 90.1 66 74.2
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 1.5e-15 86.7 147 45.6
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 2.5e-13 79.3 150 43.3
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 2.1e-12 76.3 147 42.9
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 2.1e-12 76.3 147 42.9
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 4.8e-09 65.1 41 78.0
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 1.4e-08 63.5 126 42.1
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 8.5e-06 54.3 145 35.9


User provided reference genes

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