Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21440 Coffea canephora HOM05D003209 ORTHO05D003572 4.8e-92 341.3 188 100.0
Haze_10625 Corylus avellana HOM05D003209 ORTHO05D003572 2.0e-45 186.4 184 58.2
Cfa005639 Carpinus fangiana HOM05D003209 ORTHO05D003572 2.6e-45 186.0 189 57.1
Sabra17G0040400 Salix brachista HOM05D003209 ORTHO05D003572 3.4e-45 185.7 185 56.8
Sabra17G0045200 Salix brachista HOM05D003209 ORTHO05D003572 4.4e-45 185.3 185 56.8
COL.COLO4_07841 Corchorus olitorius HOM05D003209 ORTHO05D003572 2.2e-44 183.0 188 60.1
Solyc01g105290.3 Solanum lycopersicum HOM05D003209 ORTHO05D003572 3.7e-44 182.2 185 56.2
Dinv09027 Davidia involucrata HOM05D003209 ORTHO05D003572 6.4e-44 181.4 184 58.7
Potri.017G053200 Populus trichocarpa HOM05D003209 ORTHO05D003572 3.2e-43 179.1 170 57.6
PGSC0003DMG400012580 Solanum tuberosum HOM05D003209 ORTHO05D003572 1.6e-42 176.8 178 56.7
Thecc.02G137400 Theobroma cacao HOM05D003209 ORTHO05D003572 1.6e-42 176.8 177 59.3
CAN.G523.62 Capsicum annuum HOM05D003209 ORTHO05D003572 1.3e-41 173.7 185 56.2
Dinv24184 Davidia involucrata HOM05D003209 ORTHO05D003572 3.9e-41 172.2 180 55.0
Peaxi162Scf00001g00006 Petunia axillaris HOM05D003209 ORTHO05D003572 3.9e-41 172.2 172 62.2
Eucgr.I02660 Eucalyptus grandis HOM05D003209 ORTHO05D003572 1.1e-40 170.6 175 58.9
QL11p021359 Quercus lobata HOM05D003209 ORTHO05D003572 1.1e-40 170.6 176 58.5
Duzib248G0291 Durio zibethinus HOM05D003209 ORTHO05D003572 4.3e-40 168.7 185 54.6
Actinidia23999 Actinidia chinensis HOM05D003209 ORTHO05D003572 1.6e-39 166.8 182 55.5
ClCG10G009290 Citrullus lanatus HOM05D003209 ORTHO05D003572 1.6e-39 166.8 172 55.2
PGR142G4360 Punica granatum HOM05D003209 ORTHO05D003572 2.1e-39 166.4 181 55.8
Lj5A238G39 Lonicera japonica HOM05D003209 ORTHO05D003572 2.8e-39 166.0 162 58.0
Duzib248G0974 Durio zibethinus HOM05D003209 ORTHO05D003572 3.6e-39 165.6 178 54.5
Rhsim11G0137000 Rhododendron simsii HOM05D003209 ORTHO05D003572 1.8e-38 163.3 185 54.6
TWI23G1307 Tripterygium wilfordii HOM05D003209 ORTHO05D003572 1.8e-38 163.3 178 58.4
MSTRG.16588 Avicennia marina HOM05D003209 ORTHO05D003572 2.3e-38 162.9 180 52.2
Gohir.A04G113900 Gossypium hirsutum HOM05D003209 ORTHO05D003572 5.2e-38 161.8 173 53.8
TAR376G0889 Trochodendron aralioides HOM05D003209 ORTHO05D003572 5.2e-38 161.8 167 56.3
Nitab4.5_0001619g0080 Nicotiana tabacum HOM05D003209 ORTHO05D003572 8.9e-38 161.0 172 55.2
Hma1.2p1_0704F.1_g206600 Hydrangea macrophylla HOM05D003209 ORTHO05D003572 2.6e-37 159.5 180 52.8
MELO3C024809.2 Cucumis melo HOM05D003209 ORTHO05D003572 5.8e-37 158.3 176 52.3
Gohir.D04G155300 Gossypium hirsutum HOM05D003209 ORTHO05D003572 5.8e-37 158.3 173 53.2
Gohir.D04G155400 Gossypium hirsutum HOM05D003209 ORTHO05D003572 5.8e-37 158.3 179 53.1
Gorai.012G142400 Gossypium raimondii HOM05D003209 ORTHO05D003572 5.8e-37 158.3 173 53.2
TWI59G0056 Tripterygium wilfordii HOM05D003209 ORTHO05D003572 5.8e-37 158.3 179 56.4
Migut.B00603 Erythranthe guttata HOM05D003209 ORTHO05D003572 9.9e-37 157.5 167 56.9
Nitab4.5_0000863g0230 Nicotiana tabacum HOM05D003209 ORTHO05D003572 9.9e-37 157.5 172 54.1
Ciclev10028678m.g Citrus clementina HOM05D003209 ORTHO05D003572 1.7e-36 156.8 173 54.3
Hma1.2p1_0522F.1_g171700 Hydrangea macrophylla HOM05D003209 ORTHO05D003572 2.9e-36 156.0 169 53.8
MD05G1044100 Malus domestica HOM05D003209 ORTHO05D003572 8.3e-36 154.5 182 54.9
CsaV3_4G009470 Cucumis sativus L. HOM05D003209 ORTHO05D003572 1.4e-35 153.7 171 53.8
Atru.chr6.1150 Acer truncatum HOM05D003209 ORTHO05D003572 2.4e-35 152.9 168 54.8
Duzib052G0939 Durio zibethinus HOM05D003209 ORTHO05D003572 2.4e-35 152.9 165 55.2
FAN20G0359 Fragaria x ananassa HOM05D003209 ORTHO05D003572 3.2e-35 152.5 171 56.7
CSS0024199 Camellia sinensis var. sinensis HOM05D003209 ORTHO05D003572 5.4e-35 151.8 164 59.8
Nn1g05380 Nelumbo nucifera HOM05D003209 ORTHO05D003572 7.1e-35 151.4 169 53.8
Gohir.A03G174500 Gossypium hirsutum HOM05D003209 ORTHO05D003572 9.2e-35 151.0 180 51.7
Gorai.005G221000 Gossypium raimondii HOM05D003209 ORTHO05D003572 1.6e-34 150.2 180 51.7
PGR142G0499 Punica granatum HOM05D003209 ORTHO05D003572 2.1e-34 149.8 174 52.9
Gohir.D02G197700 Gossypium hirsutum HOM05D003209 ORTHO05D003572 2.7e-34 149.4 191 50.8
Duzib052G1105 Durio zibethinus HOM05D003209 ORTHO05D003572 3.5e-34 149.1 152 56.6
Manes.10G105600 Manihot esculenta HOM05D003209 ORTHO05D003572 3.5e-34 149.1 176 50.0
Prupe.8G059500 Prunus persica HOM05D003209 ORTHO05D003572 3.5e-34 149.1 189 52.9
Gohir.A04G114000 Gossypium hirsutum HOM05D003209 ORTHO05D003572 4.6e-34 148.7 181 50.8
FvH4_2g10990 Fragaria vesca HOM05D003209 ORTHO05D003572 7.8e-34 147.9 171 55.0
CSS0010678 Camellia sinensis var. sinensis HOM05D003209 ORTHO05D003572 1.0e-33 147.5 192 55.2
Cpa.g.sc42.41 Carica papaya HOM05D003209 ORTHO05D003572 1.3e-33 147.1 171 54.4
Gohir.A04G114100 Gossypium hirsutum HOM05D003209 ORTHO05D003572 1.3e-33 147.1 177 50.8
MD10G1051300 Malus domestica HOM05D003209 ORTHO05D003572 1.3e-33 147.1 186 52.7
FAN15G1525 Fragaria x ananassa HOM05D003209 ORTHO05D003572 1.7e-33 146.7 170 54.7
FAN24G2911 Fragaria x ananassa HOM05D003209 ORTHO05D003572 2.3e-33 146.4 171 54.4
TAR628G0778 Trochodendron aralioides HOM05D003209 ORTHO05D003572 2.3e-33 146.4 164 54.3
MSTRG.20294 Avicennia marina HOM05D003209 ORTHO05D003572 3.9e-33 145.6 173 54.9
Gohir.D04G155500 Gossypium hirsutum HOM05D003209 ORTHO05D003572 1.1e-32 144.1 177 49.7
Gorai.012G142500 Gossypium raimondii HOM05D003209 ORTHO05D003572 1.1e-32 144.1 177 49.7
Sed0013803 Sechium edule HOM05D003209 ORTHO05D003572 1.1e-32 144.1 171 53.2
THA.LOC104799930 Tarenaya hassleriana HOM05D003209 ORTHO05D003572 5.6e-32 141.7 176 51.7
RcHm_v2.0_Chr6g0269191 Rosa chinensis HOM05D003209 ORTHO05D003572 2.8e-31 139.4 188 50.0
Aqoxy6G00766 Aquilegia oxysepala HOM05D003209 ORTHO05D003572 8.1e-31 137.9 162 53.1
SGA_v2.0_scaffold83G26305 Striga asiatica HOM05D003209 ORTHO05D003572 3.4e-29 132.5 165 49.7
arahy.Tifrunner.gnm1.ann1.LSHZ39 Arachis hypogaea HOM05D003209 ORTHO05D003572 5.8e-29 131.7 190 48.9
arahy.Tifrunner.gnm1.ann1.RNL651 Arachis hypogaea HOM05D003209 ORTHO05D003572 9.9e-29 131.0 190 48.9
Lsat_1_v5_gn_5_107980 Lactuca sativa HOM05D003209 ORTHO05D003572 2.9e-28 129.4 173 43.9
CARHR278150 Cardamine hirsuta HOM05D003209 ORTHO05D003572 1.1e-27 127.5 177 48.0
AUR62010145 Chenopodium quinoa HOM05D003209 ORTHO05D003572 1.1e-27 127.5 167 49.1
CiPaw.06G153900 Carya illinoinensis HOM05D003209 ORTHO05D003572 1.4e-27 127.1 121 61.2
CANSAT11G2405 Cannabis sativa HOM05D003209 ORTHO05D003572 4.1e-27 125.6 166 47.6
A02p43210 Brassica napus HOM05D003209 ORTHO05D003572 5.4e-27 125.2 157 48.4
BolC2t12392H Brassica oleracea HOM05D003209 ORTHO05D003572 5.4e-27 125.2 163 47.9
BraA02t09241Z Brassica rapa HOM05D003209 ORTHO05D003572 5.4e-27 125.2 157 48.4
EL10Ac9g21489 Beta vulgaris HOM05D003209 ORTHO05D003572 7.1e-27 124.8 168 48.2
C02p63230 Brassica napus HOM05D003209 ORTHO05D003572 7.1e-27 124.8 163 48.5
Sp2g27290 Schrenkiella parvula HOM05D003209 ORTHO05D003572 9.2e-27 124.4 177 45.8
BcaB07g29729 Brassica carinata HOM05D003209 ORTHO05D003572 7.8e-26 121.3 162 47.5
Lalb_Chr05g0217551 Lupinus albus HOM05D003209 ORTHO05D003572 1.0e-25 120.9 160 49.4
HanXRQChr16g0514781 Helianthus annuus HOM05D003209 ORTHO05D003572 1.7e-25 120.2 172 44.2
AT5G64230 Arabidopsis thaliana HOM05D003209 ORTHO05D003572 2.3e-25 119.8 161 46.0
AL8G41520 Arabidopsis lyrata HOM05D003209 ORTHO05D003572 3.0e-25 119.4 161 46.6
DCAR_001783 Daucus carota HOM05D003209 ORTHO05D003572 5.1e-25 118.6 152 45.4
Medtr2g008960 Medicago truncatula HOM05D003209 ORTHO05D003572 5.1e-25 118.6 167 46.1
Carub.0008s2502 Capsella rubella HOM05D003209 ORTHO05D003572 6.6e-25 118.2 160 48.8
Ca_00138_v3 Cicer arietinum L. HOM05D003209 ORTHO05D003572 1.5e-24 117.1 173 46.2
AUR62013140 Chenopodium quinoa HOM05D003209 ORTHO05D003572 5.6e-24 115.2 181 46.4
Ah.01g022260 Amaranthus hybridus HOM05D003209 ORTHO05D003572 1.6e-23 113.6 163 47.9
Actinidia00273 Actinidia chinensis HOM05D003209 ORTHO05D003572 4.7e-23 112.1 189 42.3
Lj6g0009269 Lotus japonicus HOM05D003209 ORTHO05D003572 8.1e-23 111.3 161 46.0
Lalb_Chr18g0060541 Lupinus albus HOM05D003209 ORTHO05D003572 1.1e-22 110.9 162 45.1
Psat1g216080 Pisum sativum HOM05D003209 ORTHO05D003572 1.4e-22 110.5 165 45.5
Sed0017399 Sechium edule HOM05D003209 ORTHO05D003572 1.4e-22 110.5 153 50.3
PSO541G0753 Papaver somniferum HOM05D003209 ORTHO05D003572 3.8e-20 102.4 158 39.9
Aa31LG1G17670 Aethionema arabicum HOM05D003209 ORTHO05D003572 4.9e-20 102.1 176 43.2
BcaC03g18250 Brassica carinata HOM05D003209 ORTHO05D003572 3.2e-19 99.4 163 42.3
PSO781G0069 Papaver somniferum HOM05D003209 ORTHO05D003572 2.7e-18 96.3 130 40.8
ECA234G4108 Erigeron canadensis HOM05D003209 ORTHO05D003572 1.7e-17 93.6 71 70.4
MBI02_g35751_MAGBIO Magnolia biondii HOM05D003209 ORTHO05D003572 3.9e-17 92.4 169 40.8
CDE10G0983 Ceratophyllum demersum HOM05D003209 ORTHO05D003572 3.6e-15 85.9 155 37.4
TPR.G25231 Trifolium pratense HOM05D003209 ORTHO05D003572 3.1e-14 82.8 112 49.1
SEGI_10884 Sequoiadendron giganteum HOM05D003209 ORTHO05D003572 2.0e-13 80.1 174 36.2
CDE07G0192 Ceratophyllum demersum HOM05D003209 ORTHO05D003572 5.8e-13 78.6 141 36.2
Nn5g28478 Nelumbo nucifera HOM05D003209 ORTHO05D003572 5.8e-13 78.6 64 64.1
Thhalv10004757m.g Eutrema salsugineum HOM05D003209 ORTHO05D003572 3.8e-12 75.9 72 59.7
PSO478G1210 Papaver somniferum HOM05D003209 ORTHO05D003572 8.4e-12 74.7 101 41.6
PSO017G6973 Papaver somniferum HOM05D003209 ORTHO05D003572 2.4e-11 73.2 94 43.6
SEGI_16820 Sequoiadendron giganteum HOM05D003209 ORTHO05D003572 2.4e-11 73.2 70 55.7
Os02g0754600 Oryza sativa ssp. japonica HOM05D003209 ORTHO05D003572 4.2e-11 72.4 92 46.7
Aqoxy2G03569 Aquilegia oxysepala HOM05D003209 ORTHO05D003572 1.6e-10 70.5 71 50.7
ATR0618G210 Amborella trichopoda HOM05D003209 ORTHO05D003572 2.1e-10 70.1 67 49.3
SMO361G0052 Selaginella moellendorffii HOM05D003209 ORTHO05D003572 3.5e-10 69.3 67 50.7
Eucgr.J00876 Eucalyptus grandis HOM05D003209 ORTHO05D003572 1.0e-09 67.8 80 46.2
Mapoly0081s0028 Marchantia polymorpha HOM05D003209 ORTHO05D003572 3.0e-09 66.2 82 51.2
MBI03_g13820_MAGBIO Magnolia biondii HOM05D003209 ORTHO05D003572 5.1e-09 65.5 65 46.2
Cfa008757 Carpinus fangiana HOM05D003209 ORTHO05D003572 6.7e-09 65.1 147 32.0
Rhsim09G0070500 Rhododendron simsii HOM05D003209 ORTHO05D003572 6.7e-09 65.1 78 38.5
HPP92_004284 Vanilla planifolia HOM05D003209 ORTHO05D003572 6.7e-09 65.1 66 57.6
Haze_11772 Corylus avellana HOM05D003209 ORTHO05D003572 1.1e-08 64.3 146 32.9
CsaV3_5G006080 Cucumis sativus L. HOM05D003209 ORTHO05D003572 1.1e-08 64.3 70 47.1
ClCG02G014090 Citrullus lanatus HOM05D003209 ORTHO05D003572 1.5e-08 63.9 63 50.8
Manes.04G066200 Manihot esculenta HOM05D003209 ORTHO05D003572 1.9e-08 63.5 67 46.3
CANSAT78G1325 Cannabis sativa HOM05D003209 ORTHO05D003572 2.5e-08 63.2 67 44.8
Lj3A848T51 Lonicera japonica HOM05D003209 ORTHO05D003572 2.5e-08 63.2 177 30.5
EL10Ac9g22971 Beta vulgaris HOM05D003209 ORTHO05D003572 7.4e-08 61.6 93 36.6
BcaB04g19064 Brassica carinata HOM05D003209 ORTHO05D003572 7.4e-08 61.6 69 40.6
Cpa.g.sc60.71 Carica papaya HOM05D003209 ORTHO05D003572 7.4e-08 61.6 67 44.8
MELO3C011751.2 Cucumis melo HOM05D003209 ORTHO05D003572 7.4e-08 61.6 63 49.2
GSVIVG01026180001 Vitis vinifera HOM05D003209 ORTHO05D003572 7.4e-08 61.6 70 41.4
BcaC01g03600 Brassica carinata HOM05D003209 ORTHO05D003572 9.6e-08 61.2 69 42.0
A03p41430 Brassica napus HOM05D003209 ORTHO05D003572 9.6e-08 61.2 69 42.0
C03p50720 Brassica napus HOM05D003209 ORTHO05D003572 9.6e-08 61.2 69 42.0
BolC3t17360H Brassica oleracea HOM05D003209 ORTHO05D003572 9.6e-08 61.2 69 42.0
BraA03t13296Z Brassica rapa HOM05D003209 ORTHO05D003572 9.6e-08 61.2 69 42.0
Sed0019111 Sechium edule HOM05D003209 ORTHO05D003572 9.6e-08 61.2 63 49.2
SMO199G0128 Selaginella moellendorffii HOM05D003209 ORTHO05D003572 9.6e-08 61.2 61 47.5
Actinidia11777 Actinidia chinensis HOM05D003209 ORTHO05D003572 1.6e-07 60.5 63 44.4
TWI74G0952 Tripterygium wilfordii HOM05D003209 ORTHO05D003572 1.6e-07 60.5 64 45.3
Dinv11729 Davidia involucrata HOM05D003209 ORTHO05D003572 2.8e-07 59.7 63 44.4
Mapoly0126s0015 Marchantia polymorpha HOM05D003209 ORTHO05D003572 2.8e-07 59.7 158 33.5
SMO147G0238 Selaginella moellendorffii HOM05D003209 ORTHO05D003572 2.8e-07 59.7 62 50.0
AagrBONN_evm.TU.Sc2ySwM_362.823 Anthoceros agrestis HOM05D003209 ORTHO05D003572 4.8e-07 58.9 62 51.6
PGR044G1643 Punica granatum HOM05D003209 ORTHO05D003572 4.8e-07 58.9 67 40.3
THA.LOC104815236 Tarenaya hassleriana HOM05D003209 ORTHO05D003572 4.8e-07 58.9 67 41.8
ATR0782G211 Amborella trichopoda HOM05D003209 ORTHO05D003572 6.2e-07 58.5 56 50.0
AagrBONN_evm.TU.Sc2ySwM_368.725 Anthoceros agrestis HOM05D003209 ORTHO05D003572 6.2e-07 58.5 81 43.2
BcaB06g26061 Brassica carinata HOM05D003209 ORTHO05D003572 6.2e-07 58.5 69 39.1
Peaxi162Scf00334g00029 Petunia axillaris HOM05D003209 ORTHO05D003572 6.2e-07 58.5 67 40.3
BcaC05g28394 Brassica carinata HOM05D003209 ORTHO05D003572 1.1e-06 57.8 69 39.1
A05p29210 Brassica napus HOM05D003209 ORTHO05D003572 1.1e-06 57.8 69 39.1
BolC5t33198H Brassica oleracea HOM05D003209 ORTHO05D003572 1.1e-06 57.8 69 39.1
CiPaw.05G170600 Carya illinoinensis HOM05D003209 ORTHO05D003572 1.1e-06 57.8 76 40.8
AL3G33480 Arabidopsis lyrata HOM05D003209 ORTHO05D003572 1.4e-06 57.4 66 39.4
AT3G19920 Arabidopsis thaliana HOM05D003209 ORTHO05D003572 1.4e-06 57.4 66 39.4
Nitab4.5_0000133g0020 Nicotiana tabacum HOM05D003209 ORTHO05D003572 1.4e-06 57.4 59 44.1
Sp3g17940 Schrenkiella parvula HOM05D003209 ORTHO05D003572 1.4e-06 57.4 69 37.7
Carub.0003s1982 Capsella rubella HOM05D003209 ORTHO05D003572 1.8e-06 57.0 66 39.4
Thhalv10022300m.g Eutrema salsugineum HOM05D003209 ORTHO05D003572 1.8e-06 57.0 69 36.2
Manes.11G102800 Manihot esculenta HOM05D003209 ORTHO05D003572 2.4e-06 56.6 68 41.2
C05p44710 Brassica napus HOM05D003209 ORTHO05D003572 3.1e-06 56.2 69 37.7
PGSC0003DMG400026828 Solanum tuberosum HOM05D003209 ORTHO05D003572 6.9e-06 55.1 67 38.8
BraA05t21805Z Brassica rapa HOM05D003209 ORTHO05D003572 9.0e-06 54.7 70 40.0
CARHR095450 Cardamine hirsuta HOM05D003209 ORTHO05D003572 9.0e-06 54.7 69 36.2
AUR62017718 Chenopodium quinoa HOM05D003209 ORTHO05D003572 9.0e-06 54.7 63 38.1
Sopen02g002620 Solanum pennellii HOM05D003209 ORTHO05D003572 9.0e-06 54.7 67 40.3


User provided reference genes

Program Settings