Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 1.7e-200 703.4 668 100.0
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.1e-85 322.0 659 62.7
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.5e-84 318.2 442 63.1
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 2.6e-84 317.4 454 62.6
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.7e-83 314.7 451 62.7
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 3.8e-83 313.5 445 57.1
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.1e-81 307.8 444 66.7
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 2.7e-81 307.4 382 62.8
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 1.2e-76 292.0 386 67.1
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.6e-76 291.6 433 68.4
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.0e-76 291.2 451 64.1
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 7.7e-76 289.3 430 65.1
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.3e-75 288.5 386 66.6
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 3.8e-75 287.0 451 63.6
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 2.5e-74 284.3 450 65.6
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.6e-73 281.6 386 65.3
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.1e-73 281.2 386 65.0
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 1.4e-72 278.5 385 67.0
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 5.2e-72 276.6 450 64.7
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 3.7e-70 270.4 452 63.3
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.2e-68 265.4 431 60.1
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 2.0e-68 264.6 394 71.1
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 3.5e-68 263.8 446 63.7
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.7e-67 261.5 450 58.2
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 2.9e-67 260.8 444 59.9
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.1e-66 258.8 429 57.8
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.2e-66 256.9 450 57.3
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 9.4e-66 255.8 449 62.8
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 2.1e-65 254.6 450 56.2
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 4.7e-65 253.4 451 63.0
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.0e-64 252.3 450 55.6
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 1.4e-64 251.9 389 69.9
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 8.8e-64 249.2 396 59.6
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 8.8e-64 249.2 450 45.3
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 2.4e-61 241.1 385 69.9
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.2e-60 238.8 423 63.6
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 1.2e-60 238.8 449 62.1
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.6e-60 238.4 362 72.7
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 1.3e-59 235.3 384 61.7
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 3.8e-59 233.8 345 75.9
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 7.2e-58 229.6 446 57.8
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 3.0e-56 224.2 343 74.9
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 1.5e-55 221.9 343 67.3
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 4.4e-55 220.3 449 60.6
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 7.5e-55 219.5 425 62.8
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 3.7e-54 217.2 396 66.2
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 2.7e-52 211.1 451 59.6
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 3.5e-52 210.7 236 45.3
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 1.0e-51 209.1 437 61.6
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.3e-51 208.0 454 59.0
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 1.1e-50 205.7 197 49.7
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 4.4e-47 193.7 394 64.5
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 3.7e-46 190.7 239 45.2
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 3.2e-45 187.6 423 60.0
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.5e-42 178.7 404 60.1
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 6.2e-41 173.3 211 40.8
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 5.2e-40 170.2 187 43.3
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 5.8e-39 166.8 298 39.6
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 7.8e-36 156.4 389 48.3
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 3.9e-35 154.1 398 55.3
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 8.6e-35 152.9 375 49.6
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.9e-34 151.8 378 46.0
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.3e-34 150.6 297 65.7
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 7.3e-34 149.8 175 41.7
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.6e-33 148.7 297 65.7
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 4.7e-33 147.1 382 53.9
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 1.1e-32 146.0 165 42.4
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.1e-32 144.4 143 50.3
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 1.5e-31 142.1 182 37.4
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 7.6e-31 139.8 178 39.3
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 2.4e-29 134.8 391 52.9
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 3.2e-29 134.4 391 49.4
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.3e-27 129.0 178 37.6
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 5.6e-26 123.6 180 38.9
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 5.6e-26 123.6 180 38.9
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 6.2e-25 120.2 181 37.6
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 9.9e-23 112.8 192 34.9
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 2.2e-22 111.7 223 32.3
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.9e-22 110.5 111 46.8
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 7.1e-21 106.7 169 33.7
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 1.6e-20 105.5 381 56.7
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.6e-20 104.0 168 35.1
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 6.0e-20 103.6 68 69.1
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 5.1e-19 100.5 64 70.3
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 4.8e-17 94.0 69 65.2
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 2.4e-16 91.7 379 36.1
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 2.6e-15 88.2 145 37.2
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 4.4e-15 87.4 69 56.5
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.6e-12 79.0 179 29.1
ATR0796G067 Amborella trichopoda HOM05D000424 ORTHO05D000355 1.3e-11 75.9 183 27.3
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.7e-11 75.5 168 28.0
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 2.3e-11 75.1 179 28.5
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.3e-11 75.1 190 26.3
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 3.0e-11 74.7 195 25.1
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 5.1e-11 73.9 194 26.3
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.6e-11 73.6 179 27.9
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 1.1e-10 72.8 194 26.8
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 1.1e-10 72.8 195 25.6
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.1e-10 72.8 196 26.0
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.5e-10 72.4 81 44.4
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.9e-10 72.0 195 23.6
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.9e-10 72.0 194 26.8
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.5e-10 71.6 195 26.2
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.3e-10 70.9 195 25.1
arahy.Tifrunner.gnm1.ann1.I4YG6Q Arachis hypogaea HOM05D000424 ORTHO05D000355 5.6e-10 70.5 161 26.7
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 7.3e-10 70.1 296 57.8
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 9.6e-10 69.7 51 64.7
TAR381G0265 Trochodendron aralioides HOM05D000424 ORTHO05D000355 9.6e-10 69.7 195 24.6
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 2.1e-09 68.6 190 23.7
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 2.1e-09 68.6 194 24.2
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 2.1e-09 68.6 92 30.4
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 4.8e-09 67.4 195 24.6
arahy.Tifrunner.gnm1.ann1.C70X24 Arachis hypogaea HOM05D000424 ORTHO05D000355 3.1e-08 64.7 155 24.5
BcaB02g09900 Brassica carinata HOM05D000424 ORTHO05D000355 3.1e-08 64.7 195 24.6
CAN.G574.31 Capsicum annuum HOM05D000424 ORTHO05D000355 3.1e-08 64.7 199 24.6
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 3.1e-08 64.7 199 22.6
Rhsim08G0188000 Rhododendron simsii HOM05D007173 ORTHO05D009151 3.1e-08 64.7 190 26.8
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 4.0e-08 64.3 199 24.1
VMungo1080G1240 Vigna mungo HOM05D000424 ORTHO05D000355 4.0e-08 64.3 155 25.2
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 5.3e-08 63.9 199 24.1
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.2e-07 62.8 126 34.1
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 2.0e-07 62.0 176 25.6
CANSAT80G1535 Cannabis sativa HOM05D000424 ORTHO05D000355 7.6e-07 60.1 190 24.7
Potri.010G083800 Populus trichocarpa HOM05D000424 ORTHO05D000355 9.9e-07 59.7 170 21.8
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 1.3e-06 59.3 176 24.4
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 1.7e-06 58.9 153 27.5
Sc09g0002270 Simmondsia chinensis HOM05D007173 ORTHO05D009151 1.7e-06 58.9 195 23.6
vmacro19218 Vaccinium macrocarpon HOM05D007173 ORTHO05D009151 1.7e-06 58.9 190 25.8
ATR0827G081 Amborella trichopoda HOM05D007173 ORTHO05D009151 4.9e-06 57.4 189 23.3
Cpa.g.sc18.34 Carica papaya HOM05D000424 ORTHO05D002854 6.4e-06 57.0 153 25.5
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 6.4e-06 57.0 105 25.7
VMungo0464G1642 Vigna mungo HOM05D007145 ORTHO05D008952 6.4e-06 57.0 166 24.7
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 8.4e-06 56.6 182 26.4
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 8.4e-06 56.6 123 28.5
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 8.4e-06 56.6 203 21.7


User provided reference genes

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