Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 5.4e-89 331.3 204 100.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.5e-59 231.9 194 67.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-58 230.3 194 67.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.7e-58 229.9 197 65.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 8.4e-58 227.6 195 64.1
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.9e-57 226.5 198 62.1
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.5e-57 224.9 181 63.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 7.1e-57 224.6 189 64.6
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.9e-56 221.1 189 62.4
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 7.9e-56 221.1 204 59.8
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.7e-55 218.0 191 61.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 181 63.0
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.5e-54 216.9 169 66.3
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 4.3e-54 215.3 198 60.6
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 5.6e-54 214.9 169 65.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.4e-54 214.5 180 63.9
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.6e-54 214.2 178 63.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.3e-53 213.8 180 64.4
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.3e-53 213.8 186 62.4
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.3e-53 213.8 169 63.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.3e-53 213.8 201 56.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.6e-53 213.4 191 60.2
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.8e-53 212.6 180 63.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 2.8e-53 212.6 191 60.2
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.8e-53 212.6 198 60.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 3.7e-53 212.2 182 58.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 6.2e-53 211.5 201 60.2
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.2e-53 211.5 191 59.2
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.1e-53 211.1 184 63.0
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 8.1e-53 211.1 191 60.2
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.4e-52 210.3 184 61.4
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.4e-52 210.3 195 59.5
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.8e-52 209.9 179 61.5
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.0e-52 208.8 199 58.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 5.3e-52 208.4 185 60.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.2e-51 207.2 187 60.4
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.2e-51 207.2 216 58.8
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.5e-51 206.8 183 60.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.5e-51 206.8 175 63.4
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.5e-51 206.8 181 60.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.6e-51 206.1 201 54.2
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 5.8e-51 204.9 197 57.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.8e-51 204.9 202 58.9
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 5.8e-51 204.9 180 61.7
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 7.6e-51 204.5 202 55.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 7.6e-51 204.5 177 61.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 7.6e-51 204.5 187 62.0
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.3e-50 203.8 209 56.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.3e-50 203.8 175 62.3
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.7e-50 203.4 203 57.6
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.7e-50 203.4 189 57.7
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.2e-50 203.0 186 70.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.9e-50 202.6 179 58.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.8e-50 202.2 185 59.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.9e-50 201.8 184 62.5
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 6.5e-50 201.4 178 58.4
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.4e-50 201.1 197 58.9
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-49 200.7 194 57.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.1e-49 200.7 194 57.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.1e-49 200.7 202 55.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.1e-49 200.7 204 56.4
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.9e-49 199.9 195 56.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-49 199.9 202 56.4
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-49 199.9 204 55.9
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.5e-49 199.5 195 56.9
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.5e-49 199.5 179 58.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.5e-49 199.5 184 57.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 3.2e-49 199.1 180 58.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.2e-49 198.7 165 65.5
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 5.5e-49 198.4 180 57.8
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 5.5e-49 198.4 202 55.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 7.1e-49 198.0 181 58.0
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 7.1e-49 198.0 184 56.5
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.2e-48 197.2 226 56.2
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.6e-48 196.8 181 58.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.6e-48 196.8 223 52.5
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.6e-48 196.8 195 54.9
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.6e-48 196.8 198 55.1
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.1e-48 196.4 201 53.7
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 6.0e-48 194.9 201 53.7
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.0e-48 194.9 197 54.8
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.9e-48 194.5 184 55.4
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.8e-47 193.4 173 57.8
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-47 193.4 183 58.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.8e-47 193.4 150 62.7
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.3e-47 193.0 187 57.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.3e-47 193.0 187 57.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.0e-47 192.6 192 56.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.0e-47 192.6 192 56.8
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 3.9e-47 192.2 198 56.1
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.1e-47 191.8 173 59.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.7e-47 191.4 161 62.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 8.7e-47 191.0 170 60.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 8.7e-47 191.0 196 55.1
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.1e-46 190.7 193 57.5
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.3e-46 189.1 169 60.4
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.3e-46 189.1 181 55.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.7e-46 188.3 212 51.4
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.4e-46 188.0 181 54.7
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 7.4e-46 188.0 175 56.0
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 9.6e-46 187.6 189 56.1
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 3.7e-45 185.7 168 58.3
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 3.7e-45 185.7 175 57.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.8e-45 185.3 195 52.8
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 4.8e-45 185.3 186 57.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 6.3e-45 184.9 167 58.1
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.4e-44 183.0 186 54.8
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 6.9e-44 181.4 163 60.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 9.0e-44 181.0 211 50.7
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.5e-43 180.3 163 60.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.4e-43 179.1 179 52.5
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.9e-43 178.3 155 60.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.9e-43 178.3 155 60.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.0e-42 177.6 179 57.0
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.7e-42 176.8 166 56.6
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.8e-42 175.6 222 46.8
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.8e-42 175.6 189 54.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.0e-42 175.3 164 56.1
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.2e-40 170.6 165 53.9
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-38 163.3 189 50.3
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.3e-36 155.2 164 54.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 9.0e-36 154.5 142 55.6
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.6e-35 152.9 185 49.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.4e-35 152.5 102 75.5
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.2e-33 145.6 98 75.5
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 7.2e-33 144.8 169 45.6
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 3.6e-32 142.5 211 45.0
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.0e-31 141.0 165 46.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 3.9e-31 139.0 100 70.0
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.1e-31 138.7 177 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.3e-30 135.6 191 43.5
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 9.1e-28 127.9 168 42.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-27 127.5 152 48.7
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.9e-27 125.2 200 41.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.9e-26 122.9 85 75.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.0e-26 122.1 168 42.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.5e-25 118.6 111 54.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 9.7e-22 107.8 110 52.7
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.3e-20 102.1 116 50.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.2e-19 100.9 68 72.1
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 1.3e-18 97.4 94 53.2
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.1e-17 94.4 82 58.5
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.2e-17 92.8 121 44.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.2e-17 92.4 105 46.7
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 9.4e-17 91.3 106 51.9
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 8.2e-13 78.2 62 66.1
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.6e-11 73.9 134 39.6
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.5e-11 72.8 112 38.4
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 3.5e-11 72.8 90 44.4
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.2e-10 70.1 82 50.0
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.2e-09 66.2 63 63.5
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.4e-09 64.7 46 71.7
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-08 63.9 96 40.6
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 8.8e-07 58.2 55 58.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 5.7e-06 55.5 55 56.4


User provided reference genes

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