Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 3.1e-53 211.5 103 100.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.1e-49 197.2 96 97.9
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.1e-29 133.3 96 66.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.1e-29 133.3 95 62.1
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.2e-29 131.7 96 63.5
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 9.2e-29 130.2 100 64.0
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.2e-28 129.8 99 61.6
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.6e-28 129.4 100 60.0
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.1e-28 129.0 100 60.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 2.1e-28 129.0 100 62.0
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.7e-28 128.6 100 59.0
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.5e-28 128.3 99 61.6
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 4.6e-28 127.9 100 59.0
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 6.0e-28 127.5 100 60.0
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 6.0e-28 127.5 102 58.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 6.0e-28 127.5 100 61.0
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 7.8e-28 127.1 95 64.2
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.0e-27 126.7 91 65.9
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.0e-27 126.7 98 60.2
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 1.3e-27 126.3 101 59.4
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.3e-27 126.3 91 64.8
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.3e-27 126.3 91 62.6
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.7e-27 125.9 98 60.2
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.0e-27 125.2 97 60.8
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.0e-27 125.2 97 60.8
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 3.9e-27 124.8 82 67.1
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 6.6e-27 124.0 96 58.3
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 8.6e-27 123.6 91 62.6
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.5e-26 122.9 88 63.6
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.5e-26 122.9 88 63.6
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.3e-26 121.7 83 67.5
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 3.3e-26 121.7 95 61.1
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 5.6e-26 120.9 100 58.0
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 9.5e-26 120.2 95 58.9
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.6e-25 119.4 87 60.9
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.1e-25 119.0 92 64.1
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.1e-25 119.0 100 58.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.8e-25 118.6 92 63.0
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.6e-25 118.2 91 62.6
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 4.7e-25 117.9 103 57.3
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 4.7e-25 117.9 88 61.4
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 4.7e-25 117.9 92 62.0
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 6.2e-25 117.5 88 59.1
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 6.2e-25 117.5 91 59.3
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 6.2e-25 117.5 92 63.0
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.2e-25 117.5 91 58.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.1e-24 116.7 92 62.0
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.1e-24 116.7 82 65.9
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.8e-24 115.9 95 57.9
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.4e-24 115.5 88 61.4
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.1e-24 115.2 88 59.1
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.1e-24 115.2 89 61.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 4.0e-24 114.8 82 64.6
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 4.0e-24 114.8 89 62.9
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.0e-24 114.8 87 64.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.0e-24 114.8 94 58.5
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 5.2e-24 114.4 84 60.7
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-23 113.2 86 60.5
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-23 113.2 101 54.5
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-23 112.5 95 58.9
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.0e-23 112.5 95 58.9
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.4e-23 111.7 86 60.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 3.4e-23 111.7 95 56.8
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 4.4e-23 111.3 82 64.6
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.4e-23 111.3 82 65.9
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.4e-23 111.3 82 65.9
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.8e-23 110.9 82 64.6
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.8e-23 110.9 90 54.4
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.6e-23 110.5 89 58.4
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 7.6e-23 110.5 89 58.4
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 1.3e-22 109.8 90 54.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.2e-22 109.0 86 60.5
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.2e-22 109.0 87 59.8
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 2.2e-22 109.0 92 57.6
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.9e-22 107.8 103 52.4
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 6.4e-22 107.5 85 58.8
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 6.4e-22 107.5 96 51.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.4e-22 107.1 95 55.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.1e-21 106.7 88 55.7
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.1e-21 106.7 87 58.6
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.4e-21 106.3 100 51.0
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.4e-21 106.3 87 57.5
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.9e-21 105.9 100 52.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.9e-21 105.9 85 58.8
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.9e-21 105.9 85 58.8
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.4e-21 105.5 99 52.5
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 4.2e-21 104.8 95 53.7
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 4.2e-21 104.8 86 54.7
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 5.4e-21 104.4 87 56.3
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.4e-21 104.4 86 57.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-21 104.4 106 50.0
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 7.1e-21 104.0 83 59.0
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 7.1e-21 104.0 87 58.6
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 7.1e-21 104.0 105 50.5
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.2e-20 103.2 87 55.2
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-20 103.2 87 59.8
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.2e-20 103.2 88 59.1
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.1e-20 102.4 86 57.0
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 2.7e-20 102.1 89 55.1
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.7e-20 102.1 87 56.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.7e-20 102.1 100 51.0
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.7e-20 102.1 101 51.5
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 2.7e-20 102.1 100 51.0
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 4.6e-20 101.3 86 54.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 4.6e-20 101.3 91 54.9
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 7.8e-20 100.5 87 55.2
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.3e-19 99.8 87 56.3
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.3e-19 99.0 80 57.5
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 2.3e-19 99.0 87 55.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 3.0e-19 98.6 87 52.9
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.0e-19 98.6 103 45.6
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 3.9e-19 98.2 69 62.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.9e-19 98.2 89 53.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.9e-19 98.2 103 45.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.1e-19 97.8 86 57.0
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 5.1e-19 97.8 103 48.5
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 5.1e-19 97.8 102 49.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 8.7e-19 97.1 89 52.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 8.7e-19 97.1 89 53.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-18 96.7 102 48.0
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.1e-18 96.7 102 48.0
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.9e-18 95.9 88 52.3
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 3.3e-18 95.1 88 53.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 4.3e-18 94.7 87 56.3
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 4.3e-18 94.7 86 55.8
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 9.6e-18 93.6 102 47.1
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.6e-18 93.6 87 57.5
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 9.6e-18 93.6 84 52.4
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.3e-17 93.2 89 52.8
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.6e-17 92.8 101 48.5
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 3.6e-17 91.7 88 56.8
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 3.6e-17 91.7 88 56.8
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 8.1e-17 90.5 102 45.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 6.9e-16 87.4 87 54.0
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 6.9e-16 87.4 87 51.7
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.2e-15 86.7 90 50.0
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.7e-14 82.8 86 47.7
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.6e-12 76.3 72 54.2
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 4.6e-12 74.7 104 40.4
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.3e-11 72.4 85 44.7
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.6e-09 65.1 95 43.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.2e-07 60.1 56 51.8
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.5e-07 59.7 93 31.2
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 2.6e-07 58.9 64 51.6
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 7.6e-07 57.4 56 50.0
C03p12380 Brassica napus HOM05D000444 ORTHO05D000489 3.8e-06 55.1 25 88.0
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 3.8e-06 55.1 25 88.0
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 6.4e-06 54.3 59 50.8


User provided reference genes

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