Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.6e-115 418.7 206 100.0
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.2e-90 335.9 196 82.1
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.2e-89 332.0 200 80.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 1.2e-88 330.1 200 79.5
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.6e-88 329.7 196 80.1
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 6.0e-88 327.8 194 80.9
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 7.9e-88 327.4 196 79.6
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.9e-86 322.8 196 78.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 2.2e-82 309.3 196 76.5
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 2.9e-82 308.9 194 75.3
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 6.5e-82 307.8 194 77.3
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.1e-81 307.0 193 76.2
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 5.5e-81 304.7 190 77.4
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 7.1e-81 304.3 194 76.3
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.0e-79 300.4 193 74.6
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.3e-79 299.3 195 73.8
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.9e-79 298.5 191 78.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 3.9e-79 298.5 194 75.8
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 4.3e-78 295.0 196 70.4
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 9.7e-78 293.9 195 74.9
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.3e-77 293.5 184 77.2
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.1e-77 292.7 200 74.5
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.8e-77 291.6 193 72.0
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 4.8e-77 291.6 193 75.6
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 6.3e-77 291.2 188 73.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 8.2e-77 290.8 188 73.9
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.8e-76 289.7 192 73.4
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 3.1e-76 288.9 193 72.5
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 9.0e-76 287.3 195 74.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 9.0e-76 287.3 192 70.8
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 5.9e-75 284.6 187 75.4
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.3e-74 283.5 192 73.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.3e-74 283.5 190 71.1
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 3.8e-74 282.0 194 70.1
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 5.0e-74 281.6 187 74.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 8.5e-74 280.8 195 72.3
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.4e-73 280.0 184 73.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 2.5e-73 279.3 190 70.5
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 4.2e-73 278.5 196 72.4
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.5e-73 278.1 179 76.0
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.2e-72 276.9 168 79.8
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 2.7e-72 275.8 187 74.3
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 2.7e-72 275.8 189 72.5
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.6e-72 275.4 196 71.4
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 4.6e-72 275.0 192 71.4
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 4.6e-72 275.0 168 79.2
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 4.6e-72 275.0 195 68.7
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 7.9e-72 274.2 191 70.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.3e-71 273.5 195 69.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.8e-71 273.1 191 70.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.8e-71 273.1 191 70.7
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.0e-71 272.3 195 68.7
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 5.1e-71 271.6 195 69.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 6.7e-71 271.2 191 70.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.7e-71 270.8 203 68.0
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 8.7e-71 270.8 196 69.4
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.5e-70 269.2 193 64.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 5.7e-70 268.1 199 65.8
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 7.4e-70 267.7 204 67.6
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.3e-69 266.9 182 72.0
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.6e-69 266.5 188 69.7
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.2e-69 266.2 204 66.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.2e-69 266.2 188 70.7
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.2e-69 266.2 186 70.4
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 8.2e-69 264.2 195 70.3
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 8.2e-69 264.2 207 67.6
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 3.1e-68 262.3 192 68.8
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 5.3e-68 261.5 192 67.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.9e-68 261.2 192 69.3
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 9.1e-68 260.8 195 63.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 9.1e-68 260.8 202 64.4
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 9.1e-68 260.8 192 67.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.2e-67 260.4 187 69.0
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 3.4e-67 258.8 191 66.0
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 3.4e-67 258.8 196 63.8
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 5.9e-67 258.1 192 67.7
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 7.7e-67 257.7 192 67.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.0e-66 255.0 192 66.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 6.5e-66 254.6 192 66.7
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 6.5e-66 254.6 192 66.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.2e-65 252.3 193 64.8
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.4e-63 246.9 189 66.1
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 5.1e-63 245.0 189 63.0
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 5.1e-63 245.0 196 62.2
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.5e-62 243.4 194 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.4e-62 241.9 198 59.6
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 4.4e-62 241.9 178 68.0
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 5.7e-62 241.5 186 61.8
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.4e-55 220.3 166 67.5
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.4e-55 220.3 150 70.7
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.2e-51 207.2 190 57.4
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.0e-50 201.8 150 65.3
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 6.5e-50 201.4 188 54.3
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.7e-48 195.3 209 48.8
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.0e-47 194.1 192 52.6
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.2e-43 180.6 168 54.2
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.2e-32 144.1 110 64.5
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 4.7e-32 142.1 83 84.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 2.0e-30 136.7 88 77.3
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 5.0e-26 122.1 95 65.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 5.0e-26 122.1 79 77.2
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.8e-20 103.6 93 61.3
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 5.4e-20 102.1 93 57.0
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.7e-18 97.1 158 38.6
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 3.9e-18 95.9 77 61.0
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.9e-18 95.9 77 61.0
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.1e-15 87.8 73 60.3
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 6.0e-11 72.0 181 31.5
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 6.0e-11 72.0 180 29.4
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 6.0e-11 72.0 49 65.3
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 7.8e-11 71.6 183 29.0
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.7e-10 70.5 176 31.2
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.9e-10 69.3 188 27.7
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 5.0e-10 68.9 174 31.0
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.0e-10 68.9 158 30.4
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 5.0e-10 68.9 149 30.9
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.1e-09 67.8 174 31.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.5e-09 67.4 166 30.7
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.9e-09 67.0 173 29.5
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.9e-09 67.0 172 29.7
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.9e-09 67.0 178 30.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.5e-09 66.6 169 27.8
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.3e-09 66.2 177 31.1
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.3e-09 65.9 202 26.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 4.3e-09 65.9 172 29.1
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.6e-09 65.5 168 30.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 5.6e-09 65.5 173 30.6
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 7.3e-09 65.1 188 27.1
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.6e-08 63.9 175 30.3
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.6e-08 63.9 171 29.8
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 6.2e-08 62.0 172 28.5
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 6.2e-08 62.0 175 27.4
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 8.1e-08 61.6 172 27.3
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.1e-08 61.6 177 30.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 8.1e-08 61.6 177 30.5
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.4e-07 60.8 168 26.8
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.8e-07 60.5 175 27.4
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.1e-07 59.7 177 30.5
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 8.9e-07 58.2 148 28.4
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-06 57.4 176 29.0
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.0e-06 57.0 176 26.1
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 4.4e-06 55.8 149 28.9
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 7.5e-06 55.1 176 29.5


User provided reference genes

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