Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.6e-167 592.8 318 100.0
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-132 476.1 318 79.2
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 4.7e-132 474.9 318 79.6
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 8.0e-132 474.2 319 79.9
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-131 473.4 318 78.3
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.4e-130 468.8 318 77.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 7.5e-130 467.6 318 76.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.9e-129 465.7 318 77.4
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.7e-129 465.3 318 77.4
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 4.9e-129 464.9 318 77.7
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 77.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 77.4
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 77.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.5e-127 458.8 318 76.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.0e-127 458.0 318 75.8
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 77.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 74.8
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.2e-124 450.3 318 76.1
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 75.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 74.5
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.8e-124 449.1 318 75.2
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.4e-123 446.8 318 75.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.8e-123 446.4 318 75.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 74.8
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.2e-121 439.5 318 73.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 73.3
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.9e-121 439.1 317 72.6
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 4.9e-121 438.3 318 74.2
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 73.9
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.9e-120 436.4 318 73.6
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 71.7
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 73.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 72.6
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 73.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 73.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 9.2e-120 434.1 318 74.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.6e-119 433.3 318 71.7
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.6e-119 433.3 362 66.3
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.7e-119 432.6 318 72.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 3.5e-119 432.2 318 72.3
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 7.8e-119 431.0 318 73.9
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 7.8e-119 431.0 318 71.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 73.3
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 73.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 72.0
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.7e-118 429.9 318 71.4
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.0e-118 429.1 318 73.9
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.9e-118 428.7 319 72.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 5.1e-118 428.3 318 73.0
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.6e-118 427.9 318 72.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 8.6e-118 427.6 318 73.6
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.5e-117 426.8 319 72.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.9e-117 426.4 318 73.9
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.5e-117 426.0 318 71.4
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 2.5e-117 426.0 318 72.6
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 72.6
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 7.3e-117 424.5 318 72.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 73.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 3.6e-116 422.2 318 70.4
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 4.7e-116 421.8 318 70.1
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.7e-116 421.8 318 73.0
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 4.7e-116 421.8 319 72.4
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.8e-115 419.9 318 72.0
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.1e-115 419.1 318 71.7
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.0e-115 418.7 318 69.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 5.2e-115 418.3 318 70.1
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.4e-114 415.6 318 71.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 5.8e-114 414.8 318 70.4
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.7e-113 413.3 321 69.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.7e-113 413.3 315 70.5
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.7e-113 413.3 281 77.6
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-112 410.6 318 71.7
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.9e-112 409.8 318 72.0
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.4e-112 408.3 318 68.9
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 9.2e-112 407.5 318 68.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.1e-111 406.4 318 68.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.6e-111 405.2 318 70.1
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.0e-111 404.8 318 68.2
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 7.8e-111 404.4 318 70.4
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.0e-110 404.1 317 68.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.7e-110 403.3 320 67.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.7e-110 403.3 319 68.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.3e-110 402.9 320 68.8
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.3e-110 402.9 318 67.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 5.6e-109 398.3 318 67.9
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.1e-108 396.4 319 66.8
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 3.6e-108 395.6 318 68.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.4e-107 392.9 318 68.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 9.0e-107 391.0 286 73.8
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-106 390.6 319 66.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 4.4e-106 388.7 319 64.9
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.4e-106 388.7 321 66.4
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.9e-106 387.5 353 60.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.2e-105 386.3 319 66.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.4e-104 383.6 304 68.8
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.9e-104 383.3 319 67.7
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.4e-104 382.9 320 66.6
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.2e-104 382.5 301 69.1
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 5.4e-104 381.7 301 68.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 9.3e-104 380.9 301 68.4
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 2.1e-103 379.8 293 71.3
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 4.6e-103 378.6 280 73.2
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.1e-101 374.0 318 63.5
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.5e-101 372.9 318 63.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 9.0e-99 364.4 270 72.6
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.0e-98 363.2 293 67.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.4e-98 362.5 270 70.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 4.5e-98 362.1 293 66.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 8.4e-97 357.8 285 68.1
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 4.2e-96 355.5 320 62.2
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 6.7e-94 348.2 318 62.9
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.9e-93 346.7 256 71.5
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.8e-92 342.8 264 70.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.4e-91 340.5 270 67.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.4e-90 335.9 318 61.0
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 7.6e-90 334.7 319 60.8
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.9e-88 330.1 318 60.7
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.9e-88 330.1 320 56.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.2e-87 327.4 318 61.0
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.9e-85 320.1 230 73.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.6e-84 317.0 318 56.3
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 8.2e-84 314.7 242 68.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.7e-81 307.0 391 51.7
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 5.9e-74 282.0 321 51.4
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.8e-73 279.3 227 64.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 1.4e-72 277.3 313 52.1
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 8.2e-68 261.5 321 47.4
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.6e-66 256.5 748 31.1
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.4e-61 239.2 181 76.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.4e-59 234.2 298 48.3
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.7e-52 210.7 192 64.1
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.2e-48 196.1 122 88.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.2e-47 194.5 150 71.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.8e-46 190.7 160 70.6
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 6.3e-44 182.2 274 47.4
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 2.9e-41 173.3 120 82.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-37 161.4 151 62.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 5.7e-37 159.1 112 68.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 7.5e-37 158.7 252 41.3
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 6.6e-33 145.6 319 32.9
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.8e-31 140.2 275 41.5
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 4.5e-26 122.9 135 59.3
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.5e-26 122.9 153 55.6
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 5.9e-26 122.5 91 67.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 5.0e-25 119.4 93 68.8
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.3e-24 116.7 110 59.1
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.8e-23 113.6 109 60.6
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.3e-22 110.5 99 57.6
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 4.9e-20 102.8 89 56.2
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.6e-15 87.8 57 78.9
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.8e-14 84.3 395 24.8
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.1e-14 83.6 58 67.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.0e-09 67.0 92 47.8
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.5e-08 64.7 126 36.5
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.6e-07 61.2 42 66.7


User provided reference genes

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