Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20640 Coffea canephora HOM05D002753 ORTHO05D003097 5.0e-57 224.2 110 100.0
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 2.1e-10 69.3 40 80.0
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 2.7e-10 68.9 44 68.2
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 3.5e-10 68.6 44 68.2
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 6.0e-10 67.8 40 72.5
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 1.7e-09 66.2 44 68.2
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 2.3e-09 65.9 41 68.3
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 2.3e-09 65.9 44 68.2
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 3.9e-09 65.1 44 65.9
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 3.9e-09 65.1 40 67.5
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 3.9e-09 65.1 44 68.2
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 5.1e-09 64.7 44 70.5
Oeu033798.3 Olea europaea HOM05D002753 ORTHO05D003097 5.1e-09 64.7 41 68.3
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 6.6e-09 64.3 41 68.3
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 6.6e-09 64.3 44 63.6
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 8.7e-09 63.9 44 70.5
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 1.1e-08 63.5 40 67.5
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 1.1e-08 63.5 44 68.2
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 1.1e-08 63.5 40 65.0
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 1.5e-08 63.2 44 63.6
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 1.5e-08 63.2 41 61.0
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 1.9e-08 62.8 44 68.2
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 1.9e-08 62.8 40 70.0
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 2.5e-08 62.4 44 59.1
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 2.5e-08 62.4 41 68.3
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 3.3e-08 62.0 44 61.4
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 4.3e-08 61.6 44 65.9
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-08 61.6 44 65.9
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-08 61.6 39 71.8
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.3e-08 61.6 44 65.9
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 4.3e-08 61.6 40 70.0
Haze_10436 Corylus avellana HOM05D002753 ORTHO05D003097 5.6e-08 61.2 44 63.6
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 7.3e-08 60.8 41 63.4
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 7.3e-08 60.8 41 63.4
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 7.3e-08 60.8 41 63.4
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 7.3e-08 60.8 41 63.4
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 7.3e-08 60.8 38 71.1
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 9.6e-08 60.5 44 65.9
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 9.6e-08 60.5 40 67.5
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 1.3e-07 60.1 44 61.4
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 1.3e-07 60.1 44 61.4
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.3e-07 60.1 40 67.5
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 1.6e-07 59.7 40 67.5
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 1.6e-07 59.7 40 67.5
ECA234G0873 Erigeron canadensis HOM05D002753 ORTHO05D003097 2.1e-07 59.3 41 63.4
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 2.8e-07 58.9 41 61.0
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 2.8e-07 58.9 44 63.6
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 2.8e-07 58.9 41 58.5
Actinidia29274 Actinidia chinensis HOM05D002753 ORTHO05D003097 3.6e-07 58.5 39 66.7
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 3.6e-07 58.5 40 65.0
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 3.6e-07 58.5 44 63.6
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 3.6e-07 58.5 41 61.0
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 4.8e-07 58.2 44 63.6
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 4.8e-07 58.2 40 65.0
SHI21328 Sapria himalayana HOM05D002753 ORTHO05D003097 6.2e-07 57.8 44 56.8
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 6.2e-07 57.8 44 61.4
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 8.1e-07 57.4 38 68.4
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 8.1e-07 57.4 38 68.4
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 8.1e-07 57.4 47 61.7
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 8.1e-07 57.4 47 61.7
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 8.1e-07 57.4 47 61.7
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 8.1e-07 57.4 47 61.7
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 8.1e-07 57.4 47 61.7
CSS0003377 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.1e-06 57.0 45 55.6
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.1e-06 57.0 40 62.5
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 1.4e-06 56.6 38 65.8
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 1.8e-06 56.2 41 58.5
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 2.4e-06 55.8 41 58.5
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.4e-06 55.8 46 60.9
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 2.4e-06 55.8 41 61.0
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 2.4e-06 55.8 41 58.5
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 3.1e-06 55.5 44 54.5
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 3.1e-06 55.5 44 54.5
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 3.1e-06 55.5 44 54.5
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 3.1e-06 55.5 46 58.7
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 5.3e-06 54.7 40 60.0
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 5.3e-06 54.7 46 60.9
Medtr1g054100 Medicago truncatula HOM05D002753 ORTHO05D003097 5.3e-06 54.7 46 60.9
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 5.3e-06 54.7 46 60.9


User provided reference genes

Program Settings