Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 2445.6 1300 100.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1690.6 1298 71.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1687.5 1335 69.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1686.8 1296 71.1
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1649.0 1227 72.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1640.2 1308 68.0
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1638.6 1292 69.3
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1585.9 1353 65.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1568.9 1292 66.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1565.8 1331 63.9
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1558.5 1287 66.8
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1553.1 1369 64.1
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1550.4 1233 66.8
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1548.5 1226 67.0
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1539.2 1315 64.9
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1537.3 1294 64.1
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1536.2 1306 63.4
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1534.2 1311 65.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1527.7 1293 65.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1203 67.0
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1513.8 1298 63.6
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1513.8 1174 67.7
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1513.0 1335 63.7
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1512.3 1291 63.3
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1510.4 1229 65.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1508.4 1254 65.3
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1508.0 1293 62.7
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1507.3 1261 65.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1506.9 1194 66.8
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1506.1 1295 62.5
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1505.0 1289 63.4
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1503.8 1180 67.4
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1503.4 1235 66.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1500.7 1233 67.9
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1497.3 1184 67.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1495.7 1291 62.9
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1490.3 1295 64.1
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1489.6 1315 63.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1235 64.7
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1361 61.4
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1487.2 1225 65.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1486.5 1293 62.1
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1287 62.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1482.2 1311 62.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1482.2 1253 65.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1186 65.3
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1226 66.1
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1198 66.1
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1471.1 1254 63.6
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1470.7 1295 62.3
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1469.5 1290 62.8
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1467.2 1237 65.0
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1467.2 1287 62.9
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1466.4 1187 66.5
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1288 61.7
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1454.9 1228 65.9
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1453.3 1317 62.0
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1453.0 1277 62.1
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1452.2 1288 61.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1449.5 1288 63.1
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1444.5 1292 60.9
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1444.1 1295 59.8
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1301 59.2
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1260 63.5
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1434.5 1302 61.3
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1428.7 1257 63.4
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1428.3 1278 62.1
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1428.3 1272 61.5
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1424.5 1234 61.7
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1423.7 1260 62.2
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1405.6 1196 62.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1401.0 1272 61.9
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1395.9 1293 61.1
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1390.9 1293 59.9
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1375.9 1293 59.9
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1358.6 1217 61.8
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1342.0 1322 57.4
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1311 57.7
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1333.9 1184 61.1
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1325.1 1312 57.5
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1322.0 1235 60.4
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1320.1 1187 61.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1319.3 1307 57.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1316.2 1193 61.0
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1298.9 1215 59.8
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1297.0 1074 64.8
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1294.3 1186 61.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1294.3 1186 61.3
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1273.8 1218 59.3
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1273.1 1269 56.0
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1269.2 1190 60.0
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1269.2 1306 55.5
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1267.7 1315 54.1
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1261.5 1249 55.6
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1235.7 1269 56.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1229.9 1172 57.1
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1229.9 1277 55.0
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1190.6 942 70.1
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1181.4 1251 55.6
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1170.2 1256 53.9
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1104.4 1128 57.5
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1094.3 1245 48.4
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 0.0e+00 1093.2 763 74.4
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1077.4 1349 47.7
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.2e-305 1052.7 1268 48.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.1e-303 1046.2 1261 48.1
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.4e-283 980.3 1237 45.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.8e-283 979.9 1225 47.2
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 7.8e-258 894.8 1265 46.2
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 2.3e-254 883.2 708 66.7
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.2e-218 764.6 1108 43.3
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 3.2e-187 660.2 436 76.1
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.0e-176 624.4 538 67.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 4.4e-168 596.7 862 47.4
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 4.9e-159 566.6 455 66.6
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.0e-157 561.2 534 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.0e-148 532.3 1210 32.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 3.0e-148 530.8 668 52.4
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.9e-148 530.4 1208 33.3
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.7e-140 505.0 1215 32.9
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.8e-135 487.3 1310 32.2
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.0e-132 479.2 608 46.7
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 2.8e-122 444.5 1204 30.3
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.0e-120 438.3 1321 30.3
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 2.3e-100 371.7 1038 31.0
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.4e-89 335.9 1285 26.8
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 8.5e-87 326.6 1033 29.6
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 4.1e-73 281.2 247 61.1
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.3e-71 276.2 514 37.5
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 3.2e-70 271.6 565 36.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 7.2e-70 270.4 327 48.9
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.6e-47 193.7 217 50.2
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.9e-38 166.0 1213 23.6
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.4e-33 149.1 340 33.8
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.1e-29 136.0 1239 23.9
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.4e-28 133.3 129 57.4
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.1e-28 132.1 129 55.8
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 4.9e-26 124.8 104 61.5
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 6.4e-26 124.4 146 49.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.2e-21 107.8 121 50.4
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 2.0e-19 102.8 96 56.2
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 4.4e-19 101.7 191 38.7
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.8e-19 101.3 187 36.4
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 6.4e-18 97.8 61 77.0
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.1e-16 92.8 112 53.6
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.3e-15 90.1 71 66.2
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 3.6e-13 82.0 70 58.6
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.0e-12 78.6 58 69.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.0e-12 78.6 58 69.0
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 9.0e-12 77.4 69 56.5
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 6.4e-10 71.2 84 42.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.6e-08 66.6 88 45.5
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.6e-08 65.1 40 72.5
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 2.3e-07 62.8 41 78.0
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 3.9e-07 62.0 76 47.4
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 1.5e-06 60.1 49 61.2


User provided reference genes

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