Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 8.7e-121 437.2 253 100.0
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 4.1e-62 242.3 232 60.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.3e-60 237.3 234 59.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 7.2e-59 231.5 217 60.4
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.6e-58 230.3 235 57.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.1e-58 228.4 231 59.7
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.8e-57 226.9 221 59.3
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.0e-56 223.4 224 57.6
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.7e-55 220.3 216 60.2
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.7e-55 220.3 231 58.0
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.7e-55 219.2 237 56.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 4.8e-55 218.8 224 55.8
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.8e-55 218.8 259 52.5
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.8e-55 218.8 230 57.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.3e-55 218.4 231 56.3
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.4e-54 217.2 228 57.5
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.4e-54 216.5 230 57.0
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 2.4e-54 216.5 223 57.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 4.1e-54 215.7 212 62.7
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 9.1e-54 214.5 220 55.9
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.6e-53 213.8 231 56.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.6e-53 213.8 224 59.4
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.5e-53 212.2 230 55.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 7.7e-53 211.5 234 56.8
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 7.7e-53 211.5 233 57.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 7.7e-53 211.5 216 59.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 7.7e-53 211.5 232 56.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.0e-52 211.1 226 57.1
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.0e-52 211.1 228 56.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.7e-52 210.3 222 57.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.7e-52 210.3 226 55.3
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 2.3e-52 209.9 214 58.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 3.8e-52 209.1 246 51.6
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.8e-52 209.1 233 56.2
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 8.6e-52 208.0 221 56.1
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.9e-51 206.8 206 59.7
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 2.5e-51 206.5 230 53.0
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.5e-51 206.5 206 59.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.5e-51 206.5 222 55.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 4.2e-51 205.7 221 54.8
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.5e-51 205.3 213 58.2
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 9.5e-51 204.5 211 58.8
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 2.8e-50 203.0 226 55.8
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.8e-50 203.0 233 54.9
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.8e-50 203.0 229 55.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.8e-50 203.0 202 58.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.8e-50 203.0 230 53.5
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 3.6e-50 202.6 226 56.6
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 6.1e-50 201.8 210 57.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 6.1e-50 201.8 207 58.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.4e-49 200.7 226 54.4
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-49 200.7 205 59.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.0e-49 199.5 230 53.5
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 5.2e-49 198.7 232 53.4
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.9e-49 198.0 238 56.3
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 3.4e-48 196.1 246 50.4
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.4e-48 196.1 225 55.6
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 4.4e-48 195.7 208 57.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 4.4e-48 195.7 231 53.7
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.7e-47 193.7 251 49.8
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.2e-47 193.4 214 56.5
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.3e-47 191.8 230 53.9
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 8.3e-47 191.4 217 54.8
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.4e-46 189.9 214 53.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.1e-46 189.5 232 54.7
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 7.0e-46 188.3 223 52.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 9.2e-46 188.0 205 55.6
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.5e-45 185.7 225 54.7
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 4.5e-45 185.7 171 63.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.3e-44 183.3 207 53.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.9e-44 183.0 230 53.0
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 3.8e-44 182.6 204 52.5
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.5e-43 179.9 258 47.7
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-43 179.1 223 51.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 9.5e-43 177.9 248 48.0
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 9.5e-43 177.9 228 52.6
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 9.5e-43 177.9 271 43.9
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 2.1e-42 176.8 195 56.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 3.6e-42 176.0 170 61.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.4e-41 174.1 149 65.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.8e-41 173.7 265 46.0
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 3.0e-41 172.9 218 50.5
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 4.0e-41 172.6 263 44.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 4.0e-41 172.6 196 54.6
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 5.2e-41 172.2 205 52.7
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.5e-40 170.6 262 45.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 5.8e-40 168.7 262 43.9
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 5.8e-40 168.7 219 47.9
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 7.5e-40 168.3 196 55.1
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.3e-39 167.5 252 46.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.2e-39 166.8 269 46.1
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.9e-39 166.4 193 54.9
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.4e-39 165.2 224 46.9
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.4e-39 165.2 186 56.5
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 8.3e-39 164.9 233 47.6
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.1e-38 164.5 205 48.3
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-38 163.7 236 49.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.8e-38 163.7 228 48.2
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 4.1e-38 162.5 226 48.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.1e-38 162.5 205 48.8
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 4.1e-38 162.5 222 49.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 5.4e-38 162.2 227 49.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 7.0e-38 161.8 228 49.6
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 7.0e-38 161.8 228 49.6
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 7.0e-38 161.8 149 62.4
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 9.2e-38 161.4 226 51.3
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.7e-37 159.8 221 48.4
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 3.5e-37 159.5 211 45.5
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.0e-36 157.9 153 60.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.3e-36 157.5 190 53.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.5e-35 154.1 266 42.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-35 154.1 236 47.5
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 3.6e-34 149.4 199 47.7
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.1e-33 147.9 254 40.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 8.9e-33 144.8 230 45.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.2e-32 144.4 244 43.9
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.7e-29 133.3 212 44.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 4.6e-29 132.5 160 48.8
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 7.8e-29 131.7 154 55.2
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.3e-28 131.0 242 38.8
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 6.6e-28 128.6 159 47.8
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.6e-28 128.3 196 41.8
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.5e-27 126.7 173 47.4
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.3e-27 126.3 224 38.8
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.3e-27 126.3 165 50.9
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 5.6e-27 125.6 202 47.5
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 5.6e-27 125.6 202 47.5
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.7e-26 122.5 205 44.4
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 3.1e-25 119.8 258 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 3.1e-25 119.8 258 39.1
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 8.9e-25 118.2 232 37.5
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.6e-24 116.7 166 47.6
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 2.9e-23 113.2 165 47.3
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 3.7e-23 112.8 176 44.9
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-22 110.9 187 47.1
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-22 110.5 86 70.9
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.9e-22 110.5 105 61.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 3.2e-22 109.8 205 42.9
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 9.2e-22 108.2 185 45.4
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.9e-19 100.5 73 69.9
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.3e-19 99.8 149 46.3
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.3e-19 99.4 187 44.4
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.6e-18 97.4 161 47.2
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 8.1e-18 95.1 58 82.8
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 8.1e-18 95.1 58 82.8
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 8.1e-18 95.1 58 82.8
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 8.1e-18 95.1 58 82.8
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.1e-17 94.7 167 42.5
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-17 92.8 77 64.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-17 92.8 55 85.5
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-17 92.8 58 79.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-16 91.3 55 83.6
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-16 91.3 75 68.0
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.3e-15 87.8 143 42.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.9e-15 86.7 182 42.9
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 4.9e-15 85.9 140 45.0
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.1e-14 84.7 200 40.5
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 3.2e-14 83.2 54 77.8
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.1e-14 82.8 51 80.4
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 2.1e-13 80.5 184 36.4
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.0e-12 78.2 51 78.4
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 3.0e-12 76.6 140 42.9
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 3.9e-12 76.3 46 82.6
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 3.9e-12 76.3 46 82.6
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.3e-11 72.8 117 44.4
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 6.2e-10 68.9 168 33.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.0e-09 66.2 83 47.0
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.4e-08 62.8 94 47.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.9e-07 60.1 55 61.8
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.9e-07 60.1 38 76.3
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.8e-07 59.7 76 52.6
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-06 58.2 111 40.5
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 1.9e-06 57.4 40 72.5


User provided reference genes

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