Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 0.0e+00 1526.5 811 100.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 5.1e-130 469.5 882 42.3
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 2.0e-126 457.6 822 43.9
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-118 431.8 928 41.1
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.2e-115 421.8 857 39.3
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 3.0e-114 417.2 845 42.8
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 6.6e-114 416.0 877 40.1
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 4.0e-111 406.8 833 42.0
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.9e-109 400.6 830 42.9
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 4.6e-107 393.3 885 39.4
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 5.1e-106 389.8 874 38.3
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 6.9e-103 379.4 852 39.9
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 6.9e-103 379.4 872 38.8
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 9.0e-103 379.0 872 38.8
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.8e-101 373.6 878 38.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 7.1e-100 369.4 864 39.5
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.6e-97 359.8 885 39.0
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 4.2e-92 343.6 902 36.3
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 5.7e-89 333.2 899 36.3
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 8.2e-88 329.3 928 35.9
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 4.2e-84 317.0 916 34.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.7e-83 314.3 868 37.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 6.1e-83 313.2 898 35.1
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.1e-82 310.1 883 36.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 6.7e-82 309.7 896 35.9
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.5e-81 307.8 855 35.0
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 5.7e-81 306.6 917 34.9
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 7.4e-81 306.2 964 35.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 8.2e-80 302.8 835 36.4
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.2e-80 302.8 883 33.0
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.2e-77 294.7 833 36.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.9e-77 294.3 833 36.5
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 8.5e-77 292.7 910 32.6
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 3.6e-75 287.3 1010 31.9
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.4e-74 285.4 921 32.5
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.4e-71 275.4 880 32.6
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 3.4e-70 270.8 886 33.7
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.5e-68 264.6 902 32.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 7.2e-68 263.1 849 33.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.0e-66 259.2 894 32.3
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 2.0e-65 255.0 828 33.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.6e-65 254.6 892 33.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 8.2e-64 249.6 879 33.4
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.8e-63 248.4 883 31.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.5e-62 245.4 942 32.1
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.0e-61 240.4 880 32.2
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 6.5e-61 240.0 882 32.3
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.5e-60 238.8 897 32.9
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.7e-59 234.6 901 31.7
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.3e-56 223.4 869 32.0
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.2e-56 223.0 881 31.7
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.8e-55 221.9 894 32.6
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.1e-55 221.1 889 31.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.1e-55 221.1 878 30.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.6e-54 218.8 888 31.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-54 218.4 888 31.0
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 4.5e-54 217.2 900 30.1
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 4.5e-54 217.2 911 30.2
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 4.5e-54 217.2 921 31.3
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 5.9e-54 216.9 906 31.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.9e-52 211.8 912 31.5
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.9e-52 211.8 896 32.3
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 4.2e-52 210.7 937 29.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 7.2e-52 209.9 795 31.9
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.2e-51 209.1 902 29.4
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.6e-51 208.8 877 30.7
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 4.7e-51 207.2 864 30.4
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 1.0e-50 206.1 866 31.1
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 2.6e-49 201.4 920 29.3
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.6e-49 201.4 885 31.1
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 4.4e-49 200.7 903 30.7
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.5e-49 199.9 950 28.4
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.3e-48 199.1 889 29.6
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.2e-48 198.4 846 30.0
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.1e-47 196.1 827 30.1
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 7.0e-47 193.4 950 29.4
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 9.1e-47 193.0 870 31.0
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 9.1e-47 193.0 661 34.0
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.0e-46 191.8 974 29.5
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.7e-46 191.4 968 29.3
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.3e-45 189.1 972 28.4
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.1e-43 181.8 822 29.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.7e-43 181.4 791 29.1
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.3e-42 178.3 885 30.8
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 4.0e-42 177.6 966 29.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.5e-41 175.6 810 31.6
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 9.8e-41 172.9 799 29.5
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.3e-40 172.6 785 29.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.3e-40 172.6 314 42.4
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.4e-39 168.3 858 29.1
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.0e-38 165.2 844 29.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 4.5e-38 164.1 938 27.5
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.3e-37 161.8 824 29.0
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 2.9e-37 161.4 935 27.6
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 6.6e-37 160.2 827 28.8
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.3e-34 151.8 877 28.3
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 3.0e-34 151.4 795 29.6
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 1.5e-33 149.1 251 45.4
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 6.4e-32 143.7 818 30.1
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 6.4e-32 143.7 903 28.1
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 8.3e-32 143.3 857 27.8
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.4e-31 142.5 977 26.4
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.8e-31 142.1 822 28.0
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.6e-30 139.0 826 28.8
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.0e-29 136.3 824 28.0
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.0e-29 136.3 917 27.4
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 8.6e-29 133.3 804 28.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-28 132.9 806 27.3
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.5e-28 131.7 889 27.2
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.5e-28 131.7 875 27.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 9.5e-28 129.8 163 55.8
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.6e-27 127.9 880 26.7
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 3.6e-27 127.9 262 40.8
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.7e-27 127.5 903 28.8
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 4.7e-27 127.5 988 25.3
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.0e-26 126.3 313 38.0
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.4e-26 125.9 847 27.6
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.4e-26 125.9 224 43.8
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.4e-26 125.9 877 26.1
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 3.1e-26 124.8 858 25.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.1e-26 124.8 859 25.7
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 9.8e-25 119.8 854 25.4
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.9e-23 115.5 875 24.8
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 4.1e-23 114.4 180 47.2
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.1e-23 114.4 345 33.3
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 5.4e-23 114.0 182 47.8
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.2e-22 112.8 348 35.6
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.0e-21 108.2 847 26.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-19 102.8 270 33.7
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.8e-18 99.0 281 34.5
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.2e-18 97.4 848 24.2
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 2.6e-17 95.1 760 25.5
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 4.4e-17 94.4 186 41.4
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 7.5e-17 93.6 77 64.9
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.3e-16 90.1 294 35.4
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 9.2e-15 86.7 112 51.8
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.6e-14 85.9 920 23.8
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 6.6e-13 80.5 138 43.5
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 1.9e-12 79.0 113 47.8
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.3e-12 77.0 66 60.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 2.1e-11 75.5 289 31.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-09 69.7 111 43.2
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.0e-09 68.9 203 33.0
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.7e-08 65.9 234 32.5
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 2.9e-08 65.1 295 29.2
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 3.7e-08 64.7 226 30.5
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 3.7e-08 64.7 80 50.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 4.9e-08 64.3 38 71.1
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 6.4e-08 63.9 220 31.4
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 6.4e-08 63.9 86 52.3
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 1.1e-07 63.2 857 25.6
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 1.4e-07 62.8 42 69.0
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.9e-07 62.4 220 30.5
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 1.9e-07 62.4 228 32.5
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 2.4e-07 62.0 752 25.8
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 5.4e-07 60.8 231 32.0
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 5.4e-07 60.8 223 31.4
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 7.1e-07 60.5 242 30.2
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 9.2e-07 60.1 758 24.9
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 3.5e-06 58.2 101 41.6
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 3.5e-06 58.2 269 30.9
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 3.5e-06 58.2 87 40.2
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 3.5e-06 58.2 263 28.1
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 6.0e-06 57.4 278 29.9
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 7.8e-06 57.0 239 31.0


User provided reference genes

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