Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.7e-123 446.0 230 100.0
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 9.8e-63 244.2 222 62.6
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.7e-62 243.4 223 61.9
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.2e-62 243.0 230 60.9
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.9e-62 241.9 230 60.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.1e-61 240.7 220 59.1
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-61 240.7 218 61.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.4e-61 240.4 225 60.9
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.8e-61 240.0 224 60.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.1e-61 239.2 224 61.2
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.1e-61 239.2 220 58.2
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 3.1e-61 239.2 219 61.6
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 9.2e-61 237.7 222 61.7
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.6e-60 236.9 231 59.3
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 2.0e-60 236.5 223 60.5
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.5e-60 235.7 218 63.8
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.5e-60 235.3 218 61.5
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 5.9e-60 235.0 231 59.7
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.3e-59 233.0 231 61.5
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 8.6e-59 231.1 207 61.8
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 8.6e-59 231.1 224 58.9
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.1e-58 230.7 223 60.5
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.5e-58 229.6 205 62.4
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.2e-57 227.3 216 58.8
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.2e-57 227.3 172 68.0
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.2e-57 227.3 215 57.7
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.8e-57 226.1 178 65.7
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.8e-57 226.1 232 58.6
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.7e-57 225.3 198 60.6
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 6.1e-57 224.9 231 57.1
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.4e-56 223.8 198 60.1
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.8e-56 223.4 174 69.5
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 4.0e-56 222.2 224 57.1
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.2e-56 221.9 222 55.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 8.9e-56 221.1 216 57.4
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 8.9e-56 221.1 217 55.3
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 1.5e-55 220.3 238 55.0
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.0e-55 219.9 222 55.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.6e-55 219.5 207 58.9
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 3.4e-55 219.2 167 68.3
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 4.4e-55 218.8 225 56.9
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.5e-55 218.0 225 56.9
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.3e-54 217.2 231 55.4
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.7e-54 216.9 223 55.6
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 1.7e-54 216.9 222 56.3
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.7e-54 216.9 215 57.2
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-54 216.5 215 57.2
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 4.9e-54 215.3 223 55.2
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 4.9e-54 215.3 170 65.9
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 8.3e-54 214.5 233 54.9
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 8.3e-54 214.5 223 55.6
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-53 213.8 235 54.5
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.4e-53 213.8 215 56.3
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.4e-53 213.8 162 67.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 1.9e-53 213.4 273 49.5
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.9e-53 213.4 225 54.7
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 2.4e-53 213.0 223 53.4
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 7.0e-53 211.5 186 62.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.6e-52 210.3 226 54.9
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.6e-52 210.3 154 71.4
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.7e-52 209.5 226 54.9
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.5e-52 209.1 250 51.6
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 6.0e-52 208.4 215 55.3
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-51 207.6 159 68.6
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.3e-51 207.2 154 70.8
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.7e-51 206.8 178 62.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.3e-51 206.5 227 54.2
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 6.6e-51 204.9 170 65.3
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.5e-50 203.8 174 63.2
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.3e-50 202.2 193 56.0
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.3e-50 202.2 166 62.7
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 5.6e-50 201.8 151 70.2
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.2e-49 200.7 218 54.6
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 2.1e-49 199.9 153 69.3
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 8.0e-49 198.0 154 66.2
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.4e-48 197.2 205 55.1
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 1.4e-48 197.2 194 58.8
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.2e-48 195.3 157 65.6
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.5e-47 193.7 158 64.6
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.0e-47 193.4 170 61.8
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.6e-47 193.0 222 53.6
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 4.4e-47 192.2 158 63.9
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 5.8e-47 191.8 189 56.1
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 1.3e-46 190.7 170 58.8
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-46 190.7 168 59.5
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-46 190.3 172 61.0
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 1.7e-46 190.3 166 62.0
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.2e-46 189.9 187 55.1
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 6.4e-46 188.3 144 70.1
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 8.3e-46 188.0 180 57.8
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.1e-45 187.6 167 59.9
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.1e-45 187.6 154 64.3
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.1e-45 187.6 170 58.8
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.4e-45 187.2 166 61.4
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 2.4e-45 186.4 179 58.7
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 2.4e-45 186.4 179 56.4
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 5.4e-45 185.3 188 58.0
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 7.0e-45 184.9 188 54.8
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.2e-44 184.1 181 62.4
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.1e-44 183.3 225 53.3
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.5e-44 182.6 188 56.4
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.5e-44 182.6 188 56.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.6e-44 182.2 156 61.5
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.8e-44 181.4 188 56.9
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.7e-43 180.3 188 56.4
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 3.0e-43 179.5 145 66.9
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 3.9e-43 179.1 188 55.3
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.3e-42 176.0 176 53.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.6e-41 172.6 198 52.5
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.2e-39 167.5 189 51.3
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 4.4e-39 165.6 216 48.6
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.0e-35 154.5 145 60.0
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.7e-35 153.7 186 52.7
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 2.3e-35 153.3 207 48.3
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 8.6e-35 151.4 215 43.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 5.6e-34 148.7 178 49.4
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 9.5e-34 147.9 146 59.6
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 2.1e-33 146.7 126 65.9
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 6.2e-33 145.2 111 72.1
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.1e-32 144.4 147 54.4
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 3.1e-32 142.9 173 48.6
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 8.9e-32 141.4 145 56.6
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.4e-29 133.3 113 67.3
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 2.5e-26 123.2 163 44.8
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.1e-25 120.2 85 64.7
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 4.8e-25 119.0 95 69.5
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 4.8e-25 119.0 190 41.1
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.1e-24 116.3 153 52.9
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.5e-23 114.0 205 41.5
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 3.4e-23 112.8 94 66.0
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-22 110.5 145 46.2
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 4.9e-22 109.0 95 60.0
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.0e-19 101.3 163 42.3
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 2.3e-19 100.1 86 64.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 5.1e-19 99.0 112 51.8
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 6.6e-19 98.6 137 44.5
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 8.7e-19 98.2 147 41.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.3e-18 95.9 169 43.2
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 5.6e-18 95.5 78 67.9
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.8e-16 90.5 199 36.7
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.7e-14 84.0 136 41.9
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 1.4e-13 80.9 113 51.3
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.2e-12 77.8 237 33.3
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.7e-12 76.6 136 39.7
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-11 72.8 71 54.9
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.7e-11 72.0 53 66.0
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 3.3e-10 69.7 85 55.3
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 7.4e-10 68.6 130 34.6
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 8.1e-09 65.1 151 35.8
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.5e-07 59.3 42 66.7
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 6.4e-06 55.5 70 44.3


User provided reference genes

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