Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 2.3e-182 642.1 333 100.0
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 3.5e-93 345.9 333 60.7
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.2e-82 310.8 345 54.2
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 3.6e-82 309.3 335 57.6
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 1.2e-80 304.3 345 53.3
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.8e-78 297.0 335 54.6
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 7.0e-78 295.0 337 53.1
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 3.5e-77 292.7 337 52.8
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 1.9e-75 287.0 346 55.2
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 8.0e-74 281.6 338 53.3
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.0e-73 279.6 338 52.7
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 2.6e-72 276.6 346 53.8
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 7.5e-72 275.0 339 51.3
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 4.9e-71 272.3 338 52.7
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 1.1e-70 271.2 350 52.0
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 4.1e-70 269.2 335 53.7
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 5.4e-70 268.9 336 51.5
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 5.4e-70 268.9 372 47.6
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 7.8e-69 265.0 317 50.8
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 7.8e-69 265.0 343 51.6
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 1.0e-68 264.6 343 51.6
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.0e-68 264.6 317 56.2
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 3.9e-68 262.7 317 49.5
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 5.0e-68 262.3 357 50.7
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 1.9e-67 260.4 336 51.2
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 4.3e-67 259.2 335 53.4
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 4.3e-67 259.2 343 50.7
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 5.6e-67 258.8 345 51.6
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.2e-66 257.7 336 50.9
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 2.8e-66 256.5 312 52.6
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 2.0e-64 250.4 311 52.4
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 2.0e-64 250.4 337 52.2
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.7e-63 247.3 338 51.8
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 7.0e-62 241.9 338 47.9
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 3.5e-61 239.6 340 48.8
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.3e-60 237.7 337 48.1
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 2.3e-60 236.9 315 49.5
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 4.7e-58 229.2 339 48.1
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.2e-56 224.6 343 47.8
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 1.5e-56 224.2 342 48.0
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 2.6e-56 223.4 344 45.3
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 4.4e-56 222.6 345 47.5
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.3e-55 221.1 344 45.9
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 1.3e-55 221.1 337 46.3
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 2.9e-55 219.9 366 44.0
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.1e-54 218.0 330 45.8
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.2e-54 216.5 330 46.4
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.7e-53 213.4 332 45.8
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.7e-53 213.4 332 45.8
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 3.3e-51 206.5 397 43.6
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 9.5e-51 204.9 328 45.1
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 2.8e-50 203.4 345 44.3
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 8.9e-49 198.4 333 45.0
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 1.4e-46 191.0 289 45.0
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 5.4e-46 189.1 334 43.4
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 2.7e-45 186.8 395 38.5
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 3.5e-45 186.4 290 46.9
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 1.0e-44 184.9 336 43.8
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 1.0e-44 184.9 315 43.5
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 1.1e-41 174.9 249 46.6
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.4e-41 174.5 172 55.2
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 8.9e-41 171.8 341 41.3
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 2.0e-40 170.6 337 42.7
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 1.7e-39 167.5 340 40.6
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 3.8e-39 166.4 335 41.8
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 1.4e-38 164.5 336 39.3
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 4.2e-38 162.9 337 41.8
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 2.1e-37 160.6 280 44.6
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 2.7e-37 160.2 336 38.7
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 1.3e-36 157.9 352 37.5
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 1.3e-36 157.9 330 39.7
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 5.1e-36 156.0 320 40.0
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 5.6e-35 152.5 356 39.9
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 3.1e-33 146.7 339 39.5
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 2.0e-32 144.1 331 40.5
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 6.4e-31 139.0 332 36.7
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.9e-30 137.5 345 36.5
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 4.2e-30 136.3 332 37.0
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.1e-29 134.0 329 37.4
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 7.9e-29 132.1 350 37.7
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.3e-28 131.3 336 36.9
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 5.1e-28 129.4 239 42.7
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 6.6e-28 129.0 307 37.8
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 1.9e-27 127.5 339 37.8
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 7.3e-27 125.6 336 38.1
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 2.1e-26 124.0 339 34.5
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.8e-25 120.9 342 35.1
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 3.1e-25 120.2 207 43.5
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 5.3e-25 119.4 314 36.6
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 1.5e-24 117.9 339 38.1
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 3.4e-24 116.7 328 35.7
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 4.5e-24 116.3 330 34.2
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 9.9e-24 115.2 337 35.9
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 1.3e-23 114.8 332 33.1
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 5.4e-22 109.4 293 34.5
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 9.3e-22 108.6 335 37.0
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 9.3e-22 108.6 224 37.1
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 2.1e-21 107.5 193 39.9
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 4.6e-21 106.3 333 36.0
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 7.9e-21 105.5 353 36.8
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 1.0e-20 105.1 241 40.2
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.0e-20 105.1 202 36.6
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 1.8e-20 104.4 350 35.1
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 2.3e-20 104.0 336 36.3
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.3e-20 104.0 227 37.9
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 3.0e-20 103.6 304 35.2
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 3.9e-20 103.2 317 34.1
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 3.9e-20 103.2 329 34.0
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 6.7e-20 102.4 335 33.7
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 2.8e-18 97.1 217 34.6
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.4e-17 94.0 328 30.5
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.6e-16 90.5 151 44.4
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 3.4e-16 90.1 69 76.8
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 1.0e-15 88.6 198 36.9
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 1.2e-13 81.6 218 34.9
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 2.1e-13 80.9 117 49.6
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.3e-10 71.6 106 47.2
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 1.4e-09 68.2 231 32.0
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 5.3e-09 66.2 325 30.8
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 1.5e-08 64.7 125 38.4
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 2.6e-08 63.9 50 74.0
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 1.0e-07 62.0 336 29.8
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.0e-07 62.0 312 29.5


User provided reference genes

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