Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.2e-151 538.9 261 100.0
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 7.7e-64 248.1 254 54.3
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.8e-63 245.7 260 53.1
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 3.2e-62 242.7 255 52.9
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 7.2e-62 241.5 259 54.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 9.4e-62 241.1 259 54.4
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 1.2e-61 240.7 258 51.9
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.2e-61 240.7 251 53.4
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 1.6e-61 240.4 258 52.3
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.0e-61 238.0 251 51.4
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.0e-61 238.0 251 51.8
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.0e-61 238.0 251 51.8
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.4e-60 237.3 254 51.2
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.4e-60 237.3 256 53.5
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.8e-60 236.9 254 52.4
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.8e-60 236.9 254 50.4
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 5.2e-60 235.3 258 52.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 5.2e-60 235.3 256 52.3
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 1.5e-59 233.8 254 52.0
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.5e-59 233.8 251 51.8
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.5e-59 233.8 259 50.2
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.0e-59 233.4 254 51.6
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.0e-59 233.4 254 50.4
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.0e-59 233.4 261 49.0
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.0e-59 233.4 254 51.6
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 2.0e-59 233.4 254 51.2
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.0e-59 233.4 260 52.3
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.6e-59 233.0 254 50.8
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 3.3e-59 232.6 256 51.2
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 3.3e-59 232.6 254 51.2
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 7.5e-59 231.5 253 51.0
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 7.5e-59 231.5 259 49.8
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 9.7e-59 231.1 254 48.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.3e-58 230.7 255 49.0
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.2e-58 229.9 256 50.4
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 2.2e-58 229.9 255 51.0
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.8e-58 229.6 258 49.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 3.7e-58 229.2 259 49.4
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 6.3e-58 228.4 255 51.0
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-57 227.3 256 49.6
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 1.8e-57 226.9 267 49.4
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.8e-57 226.9 255 51.0
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 1.8e-57 226.9 254 49.2
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 3.1e-57 226.1 258 50.4
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 4.1e-57 225.7 266 48.1
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 4.1e-57 225.7 254 50.0
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.2e-56 224.2 254 47.2
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.2e-56 224.2 277 48.0
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.6e-56 223.8 261 49.4
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.0e-56 223.4 277 48.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 5.9e-56 221.9 256 49.2
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.9e-56 221.9 249 50.6
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.7e-55 220.3 254 48.8
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.7e-55 220.3 261 48.3
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 2.2e-55 219.9 175 63.4
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 6.5e-55 218.4 254 48.0
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.9e-54 216.9 263 47.1
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.9e-54 216.9 254 48.0
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 5.5e-54 215.3 256 47.7
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 5.5e-54 215.3 255 47.5
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.2e-53 214.2 275 49.1
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.1e-53 213.4 274 44.5
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.1e-53 213.4 188 56.9
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 2.7e-53 213.0 171 63.2
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 4.7e-53 212.2 254 46.5
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 4.7e-53 212.2 258 48.1
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.0e-52 209.1 254 46.5
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 5.2e-52 208.8 254 46.1
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 6.8e-52 208.4 269 45.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.8e-52 208.0 256 46.5
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.5e-51 207.2 256 46.5
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.4e-51 206.1 254 45.7
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 5.7e-51 205.3 258 46.9
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 7.5e-51 204.9 240 49.6
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 7.5e-51 204.9 254 46.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.3e-50 204.1 193 54.4
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.3e-50 204.1 180 58.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 1.7e-50 203.8 254 45.3
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 6.3e-50 201.8 170 60.0
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.3e-50 201.4 254 45.7
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.8e-49 200.3 167 59.3
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 4.1e-49 199.1 254 42.5
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.7e-48 196.4 170 57.6
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 3.5e-48 196.1 252 45.2
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.5e-48 195.7 254 42.9
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 5.9e-48 195.3 264 46.2
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 7.7e-48 194.9 254 42.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 8.5e-47 191.4 171 57.3
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.9e-46 190.3 255 44.7
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 7.2e-46 188.3 97 85.6
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 7.2e-46 188.3 167 53.9
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.6e-45 186.0 254 43.7
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 4.7e-45 185.7 190 47.9
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 2.8e-42 176.4 254 41.3
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.7e-42 176.0 263 41.4
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.1e-41 174.5 224 46.0
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 2.7e-40 169.9 289 37.4
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 8.6e-39 164.9 171 48.5
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.1e-38 164.5 167 50.3
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 1.9e-38 163.7 270 39.6
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.8e-37 159.8 201 46.3
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 3.6e-37 159.5 198 41.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 3.0e-36 156.4 168 43.5
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.0e-36 156.0 77 87.0
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 1.4e-33 147.5 228 40.8
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.2e-32 144.4 175 42.3
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 6.6e-31 138.7 168 39.9
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 4.3e-30 136.0 228 39.5
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 5.6e-30 135.6 178 44.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 6.2e-29 132.1 225 39.1
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.2e-28 129.0 261 35.6
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 1.2e-27 127.9 198 40.9
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.4e-27 125.9 224 38.4
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 5.8e-27 125.6 199 39.7
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.7e-26 124.0 63 87.3
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.2e-26 123.6 91 64.8
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.1e-25 121.3 201 40.3
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 3.5e-24 116.3 56 89.3
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.3e-23 114.4 59 79.7
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 8.6e-23 111.7 204 39.7
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.1e-22 111.3 155 36.8
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 1.1e-20 104.8 89 46.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 2.2e-18 97.1 275 33.1
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 3.2e-17 93.2 153 29.4
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.6e-16 90.9 161 31.1
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 7.8e-16 88.6 149 33.6
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 9.5e-14 81.6 79 40.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 4.7e-13 79.3 40 82.5
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.7e-10 70.9 177 34.5
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 2.9e-10 70.1 33 84.8
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 2.9e-10 70.1 33 84.8
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 1.9e-09 67.4 110 39.1
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 4.1e-09 66.2 72 31.9
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 7.1e-09 65.5 180 32.2
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.2e-08 64.7 83 37.3
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.7e-08 63.5 161 30.4
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 3.5e-08 63.2 180 28.3
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 4.3e-06 56.2 27 88.9


User provided reference genes

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