Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 2.3e-148 528.9 264 100.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 5.5e-126 454.5 264 85.6
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 3.5e-125 451.8 261 85.8
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.0e-124 448.7 264 84.1
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.0e-124 448.7 264 84.1
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 8.7e-124 447.2 264 83.3
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.1e-123 446.8 261 85.1
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 1.1e-123 446.8 264 83.0
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 2.5e-123 445.7 264 83.0
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.6e-122 443.0 260 83.5
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 2.2e-122 442.6 262 84.4
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 2.8e-122 442.2 260 83.5
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.8e-122 442.2 260 82.7
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.8e-122 441.4 262 84.4
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.8e-122 441.4 262 84.4
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.1e-121 440.3 262 84.7
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.4e-121 439.9 262 84.4
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.8e-121 439.5 263 82.9
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.8e-121 439.5 260 81.9
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.4e-121 439.1 264 83.3
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 3.1e-121 438.7 262 83.6
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 5.3e-121 438.0 261 81.6
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 6.9e-121 437.6 263 84.0
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 6.9e-121 437.6 263 84.0
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 6.9e-121 437.6 260 82.7
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 6.9e-121 437.6 263 82.9
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 1.2e-120 436.8 262 83.6
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.5e-120 436.4 262 84.0
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 2.0e-120 436.0 264 82.2
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.6e-120 435.6 261 80.5
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 4.5e-120 434.9 262 82.8
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 7.7e-120 434.1 263 82.9
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.0e-119 433.7 263 82.5
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 1.0e-119 433.7 290 75.9
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.7e-119 433.0 262 82.8
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 2.9e-119 432.2 262 83.2
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.0e-119 431.4 288 75.3
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.1e-118 430.3 271 81.2
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.4e-118 429.9 264 82.2
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 2.5e-118 429.1 262 81.7
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.2e-118 428.7 262 81.3
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 4.2e-118 428.3 262 81.3
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 5.5e-118 427.9 263 81.4
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 7.2e-118 427.6 262 82.1
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.2e-117 426.8 263 80.6
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.2e-117 426.8 263 80.6
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 2.1e-117 426.0 262 81.7
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 2.7e-117 425.6 262 81.3
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 2.7e-117 425.6 262 81.7
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 3.6e-117 425.2 262 81.3
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 4.6e-117 424.9 262 80.5
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.6e-117 424.9 262 80.5
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 4.6e-117 424.9 267 80.5
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 4.6e-117 424.9 262 81.7
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 6.1e-117 424.5 296 73.3
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 6.1e-117 424.5 263 80.2
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 6.1e-117 424.5 266 80.8
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.0e-116 423.7 262 79.4
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 1.4e-116 423.3 262 81.3
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.4e-116 423.3 266 80.1
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.8e-116 422.9 262 80.5
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 3.0e-116 422.2 265 80.0
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.9e-116 421.8 262 80.2
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 3.9e-116 421.8 262 80.2
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 5.1e-116 421.4 262 80.2
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 8.8e-116 420.6 262 79.8
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.1e-115 420.2 265 79.6
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.1e-115 420.2 261 80.8
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.5e-115 419.9 267 80.1
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 2.5e-115 419.1 261 80.1
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 4.3e-115 418.3 263 79.8
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 9.7e-115 417.2 268 79.1
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 1.3e-114 416.8 259 76.8
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 6.3e-114 414.5 261 77.4
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 1.1e-113 413.7 265 78.5
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.4e-113 412.5 264 78.4
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 3.1e-113 412.1 262 78.2
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 1.0e-111 407.1 248 80.6
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.0e-111 407.1 261 76.6
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.1e-110 403.7 265 79.2
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.9e-110 402.9 242 83.5
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 5.5e-110 401.4 262 75.2
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.6e-109 399.8 265 78.1
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 6.1e-109 397.9 235 83.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.9e-108 395.2 235 82.1
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 6.3e-106 387.9 243 79.4
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 6.3e-106 387.9 243 79.4
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 5.9e-104 381.3 233 79.0
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 5.9e-104 381.3 260 71.9
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.9e-102 376.3 260 73.8
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 5.5e-102 374.8 266 72.6
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 6.7e-100 367.9 262 74.0
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.6e-99 365.9 262 73.7
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.3e-98 363.6 262 72.5
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.3e-98 363.6 261 67.8
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.2e-98 362.8 462 47.8
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 6.3e-98 361.3 292 67.8
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 7.0e-97 357.8 260 66.9
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.0e-96 356.3 231 78.4
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 2.7e-96 355.9 220 81.4
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 2.2e-95 352.8 223 78.9
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.0e-95 351.7 261 66.7
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 2.7e-93 345.9 220 78.6
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.6e-93 345.5 266 70.3
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 7.5e-91 337.8 260 65.4
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 8.3e-90 334.3 203 82.3
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 7.0e-89 331.3 247 66.0
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 7.0e-89 331.3 260 68.5
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.0e-87 327.4 252 67.5
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.3e-87 327.0 280 65.4
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 8.5e-87 324.3 261 64.8
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 5.5e-86 321.6 208 76.4
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 4.4e-83 312.0 262 65.3
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 8.3e-82 307.8 336 55.7
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.8e-81 306.6 260 59.6
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 7.7e-80 301.2 215 73.0
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.0e-79 300.8 291 58.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.9e-79 299.3 262 62.2
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.2e-77 293.9 222 69.4
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 4.9e-74 282.0 219 67.6
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 6.4e-74 281.6 169 82.2
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.7e-71 273.5 171 80.7
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.4e-68 263.8 173 75.1
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.7e-66 256.9 237 51.5
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 2.9e-66 256.1 257 49.8
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 4.9e-66 255.4 296 51.4
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.2e-61 240.7 144 84.7
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 1.8e-60 236.9 243 51.4
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 3.7e-58 229.2 145 73.1
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 4.9e-58 228.8 218 57.8
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.9e-57 226.9 169 70.4
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 5.2e-44 182.2 115 76.5
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 2.6e-43 179.9 124 72.6
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 5.4e-41 172.2 130 72.3
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.3e-37 161.0 91 80.2
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 9.0e-36 154.8 261 41.4
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 2.9e-34 149.8 92 76.1
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 3.5e-32 142.9 186 46.2
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-28 131.3 128 54.7
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.7e-16 90.1 51 78.4


User provided reference genes

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