Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 0.0e+00 1108.2 583 100.0
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.7e-244 849.4 598 79.9
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 7.1e-243 844.0 538 84.6
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 8.7e-241 837.0 584 78.9
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.9e-240 835.9 580 79.8
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.1e-239 832.4 574 79.4
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.8e-239 831.2 584 79.3
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.8e-239 831.2 539 83.3
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.8e-239 831.2 539 83.7
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 5.3e-238 827.8 535 83.7
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.6e-237 825.5 558 81.2
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 9.9e-237 823.5 576 79.7
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.1e-235 820.1 531 83.6
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.4e-235 818.9 573 78.7
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 4.2e-235 818.1 570 78.9
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.2e-234 816.6 581 77.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.2e-234 816.6 589 76.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.2e-234 816.6 563 78.3
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.1e-234 815.8 584 77.7
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 2.7e-234 815.5 581 77.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 2.7e-234 815.5 591 76.3
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.5e-234 815.1 568 79.0
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.5e-234 815.1 582 76.3
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.6e-234 814.7 545 80.2
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.0e-234 814.3 586 76.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 7.9e-234 813.9 544 82.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 7.9e-234 813.9 539 80.9
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.0e-233 813.5 568 78.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.3e-233 813.1 582 76.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.3e-233 812.4 582 77.1
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.3e-233 812.4 561 80.0
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.9e-233 811.6 585 75.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.9e-233 811.6 568 78.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 5.1e-233 811.2 573 77.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 6.6e-233 810.8 582 76.3
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 8.7e-233 810.4 572 78.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 8.7e-233 810.4 539 81.6
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.1e-232 810.1 581 76.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.1e-232 810.1 537 81.6
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.5e-232 809.7 531 82.5
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-232 809.7 585 75.9
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 7.3e-232 807.4 534 81.3
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.3e-232 807.4 541 80.2
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 9.6e-232 807.0 571 76.9
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.3e-231 806.6 533 81.4
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.6e-231 806.2 570 77.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.1e-231 805.8 583 77.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 2.1e-231 805.8 500 85.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.8e-231 805.4 533 80.3
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 4.8e-231 804.7 580 77.2
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 6.2e-231 804.3 578 77.2
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 6.2e-231 804.3 578 77.2
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 6.2e-231 804.3 583 75.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 6.2e-231 804.3 583 76.3
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.1e-231 803.9 533 80.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-230 803.5 533 80.5
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.4e-230 803.1 597 75.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.4e-230 803.1 583 75.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.8e-230 802.7 587 76.5
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.8e-230 802.7 531 80.0
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.1e-230 802.0 586 75.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 3.1e-230 802.0 533 80.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.1e-230 802.0 530 81.1
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 4.0e-230 801.6 582 76.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 6.9e-230 800.8 534 81.3
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 6.9e-230 800.8 582 75.8
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 6.9e-230 800.8 530 80.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 6.9e-230 800.8 494 85.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 9.0e-230 800.4 582 75.8
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-229 800.0 582 74.7
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.2e-229 800.0 532 79.9
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.6e-229 798.9 591 75.5
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.6e-229 798.9 575 76.5
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.6e-229 798.9 558 77.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 4.5e-229 798.1 558 77.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 5.8e-229 797.7 592 75.0
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 9.9e-229 797.0 537 79.9
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.7e-228 796.2 598 73.6
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 2.2e-228 795.8 582 74.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 6.4e-228 794.3 560 77.3
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.1e-227 793.5 525 82.7
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.9e-227 792.7 546 79.5
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 4.2e-227 791.6 537 79.3
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.1e-227 790.8 539 77.9
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 3.5e-226 788.5 583 75.0
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.5e-226 788.5 561 77.0
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.3e-225 786.6 583 74.1
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.8e-225 786.2 584 74.7
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 3.9e-225 785.0 542 80.1
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 7.4e-224 780.8 585 73.5
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.1e-223 779.2 528 78.0
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.1e-223 779.2 517 80.9
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.1e-223 779.2 528 80.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 8.4e-220 767.3 497 83.3
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.1e-219 766.9 557 75.0
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 4.1e-214 748.4 534 75.1
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 6.9e-214 747.7 567 73.4
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.1e-210 736.1 435 89.4
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 8.7e-209 730.7 506 76.9
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.3e-207 726.9 493 80.3
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-205 720.3 468 79.9
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-203 713.4 493 76.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.6e-202 709.9 505 75.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.1e-202 709.5 437 85.6
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.4e-201 706.8 436 85.8
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.4e-200 701.0 728 58.1
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 9.7e-200 700.7 437 84.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 8.2e-199 697.6 458 79.7
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 2.2e-196 689.5 578 69.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.2e-194 683.7 481 74.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.3e-193 679.5 579 66.5
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 3.3e-192 675.6 520 70.4
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.0e-185 652.5 516 67.1
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-184 650.6 396 87.6
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 3.7e-183 645.6 438 78.1
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.3e-183 644.8 515 66.2
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.1e-178 629.8 397 82.9
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.4e-177 627.1 425 77.9
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.4e-177 627.1 420 78.6
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 8.3e-175 617.8 418 77.3
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-174 617.1 390 83.6
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.4e-174 616.3 462 75.3
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.1e-174 615.9 424 75.5
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.2e-173 614.0 424 75.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 8.0e-170 601.3 406 78.6
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 4.0e-161 572.4 583 58.3
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.5e-155 553.9 468 67.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.2e-149 534.3 446 69.1
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-145 520.8 316 86.1
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.3e-145 520.0 533 59.1
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.1e-138 496.9 374 73.8
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.2e-130 471.1 353 70.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.1e-129 468.0 299 81.9
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.6e-125 452.6 393 67.4
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.5e-123 447.6 299 82.3
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.0e-121 439.5 499 49.9
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.8e-120 435.6 269 84.0
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.2e-117 427.9 259 87.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 4.3e-115 419.5 285 77.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 9.0e-89 332.0 482 47.3
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.8e-76 288.9 203 71.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.5e-75 288.1 185 78.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 9.1e-73 278.9 575 39.1
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.1e-65 255.4 208 71.2
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.1e-65 253.8 229 60.3
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.1e-54 218.8 193 60.6
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 8.8e-52 209.1 142 78.9
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.9e-50 203.4 168 64.3
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.3e-47 195.3 127 78.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.1e-46 192.2 120 80.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.9e-34 151.0 175 54.3
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 9.2e-33 146.0 109 76.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.5e-32 144.1 94 75.5
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.0e-32 143.3 145 59.3
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.4e-28 132.1 103 72.8
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 9.8e-27 125.9 78 84.6
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.9e-26 123.6 69 89.9
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 1.1e-25 122.5 94 66.0
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.5e-22 111.3 104 60.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 6.8e-20 103.2 61 83.6
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 9.9e-19 99.4 142 47.2
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 6.4e-18 96.7 70 77.1
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.7e-15 88.6 53 84.9
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.8e-13 81.3 58 72.4
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 3.8e-10 70.9 141 36.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 3.5e-08 64.3 93 44.1
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 6.6e-07 60.1 39 76.9
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.9e-06 58.5 50 62.0


User provided reference genes

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