Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 1.2e-302 1042.3 518 100.0
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 6.7e-269 930.2 521 86.4
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.3e-268 927.9 519 87.1
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 3.3e-268 927.9 520 86.9
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 5.7e-268 927.2 518 87.3
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 9.6e-268 926.4 518 87.1
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 6.3e-267 923.7 521 85.6
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 6.3e-267 923.7 518 86.7
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 3.1e-266 921.4 521 87.1
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 4.1e-266 921.0 521 86.8
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 6.9e-266 920.2 521 85.4
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 1.2e-265 919.5 521 85.4
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 1.5e-265 919.1 521 86.6
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.6e-265 918.3 521 85.2
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 5.9e-265 917.1 521 85.2
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.3e-264 916.0 519 86.5
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.9e-264 914.8 521 85.2
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 5.0e-264 914.1 521 84.6
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 8.4e-264 913.3 521 84.6
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 1.1e-263 912.9 521 84.8
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 7.2e-263 910.2 521 84.6
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 7.2e-263 910.2 520 85.0
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 9.3e-263 909.8 521 84.5
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 1.2e-262 909.4 521 84.5
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 6.1e-262 907.1 521 83.7
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 1.8e-261 905.6 521 84.6
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 3.0e-261 904.8 521 84.5
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 5.1e-261 904.0 521 83.5
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 5.1e-261 904.0 521 84.1
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 6.7e-261 903.7 521 83.5
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 8.7e-261 903.3 521 83.3
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 1.1e-260 902.9 520 83.7
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.5e-260 902.5 522 84.1
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 1.9e-260 902.1 521 84.1
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 2.5e-260 901.7 522 84.3
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.3e-260 901.4 508 85.8
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.3e-260 901.4 521 84.6
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 4.3e-260 901.0 521 83.5
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 5.7e-260 900.6 521 83.5
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 9.7e-260 899.8 521 84.5
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 9.7e-260 899.8 518 84.0
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 2.8e-259 898.3 518 84.4
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 2.8e-259 898.3 521 84.3
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 3.7e-259 897.9 521 83.1
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 3.7e-259 897.9 520 84.2
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 6.3e-259 897.1 518 83.8
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 8.2e-259 896.7 518 84.2
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.1e-258 894.4 521 84.1
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.2e-257 892.9 520 83.3
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 2.6e-257 891.7 518 83.4
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 1.0e-256 889.8 531 82.3
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 1.9e-255 885.6 556 78.8
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 3.2e-255 884.8 547 80.1
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 3.2e-255 884.8 522 81.8
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 9.4e-255 883.2 522 83.1
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 6.1e-254 880.6 521 81.6
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 1.8e-253 879.0 521 82.1
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 3.9e-253 877.9 520 81.9
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 8.8e-253 876.7 521 81.4
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 8.8e-253 876.7 624 72.8
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 2.0e-252 875.5 521 80.6
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 5.7e-252 874.0 521 80.8
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 7.4e-252 873.6 521 80.6
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 9.7e-252 873.2 516 82.2
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 1.3e-251 872.8 518 80.5
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.7e-251 872.5 521 80.2
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 2.2e-251 872.1 521 80.6
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 2.2e-251 872.1 521 80.8
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 2.8e-251 871.7 521 82.1
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 2.8e-251 871.7 521 81.0
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 2.8e-251 871.7 521 79.8
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 4.8e-251 870.9 521 80.6
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 8.2e-251 870.2 521 80.6
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 1.1e-250 869.8 521 80.4
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 1.1e-250 869.8 521 81.2
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 1.4e-250 869.4 521 80.2
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 1.4e-250 869.4 521 81.6
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.8e-250 869.0 521 80.8
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 2.4e-250 868.6 521 80.4
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.4e-250 868.6 542 78.2
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 2.4e-250 868.6 521 81.8
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 3.1e-250 868.2 518 80.1
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 3.1e-250 868.2 518 80.1
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.5e-249 865.9 521 81.2
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 1.1e-247 859.8 524 79.4
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.2e-247 858.2 518 80.5
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 3.0e-245 851.7 521 79.5
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.0e-245 851.7 518 79.0
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 3.3e-244 848.2 516 79.1
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 2.4e-242 842.0 466 87.3
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.3e-240 836.3 521 78.5
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 2.9e-240 835.1 516 80.8
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 4.7e-238 827.8 517 78.9
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 4.4e-236 821.2 518 77.4
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 6.3e-235 817.4 519 76.5
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.3e-232 809.7 518 78.0
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 3.6e-230 801.6 521 74.7
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.6e-228 795.4 468 81.4
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 1.7e-227 792.7 520 74.0
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 3.7e-227 791.6 468 82.7
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 3.5e-225 785.0 439 87.0
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 1.5e-223 779.6 521 72.4
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 1.4e-221 773.1 443 84.9
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 8.8e-221 770.4 434 85.7
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 2.6e-220 768.8 439 85.2
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.7e-219 765.0 465 80.4
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 1.2e-206 723.4 517 69.4
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.9e-199 699.5 519 67.1
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.5e-191 672.5 462 72.7
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 3.6e-190 668.7 505 64.6
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 1.0e-176 624.0 397 79.6
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 2.9e-171 605.9 561 54.7
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 7.4e-167 591.3 527 57.3
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 4.3e-151 538.9 433 60.7
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.7e-147 526.9 499 53.5
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.5e-143 513.8 332 76.5
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 4.1e-117 426.0 233 88.8
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 2.0e-84 317.4 254 60.2
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 8.3e-78 295.4 158 89.2
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 2.6e-55 220.7 498 30.9
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 4.9e-38 163.3 208 46.6
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 1.6e-33 148.3 90 81.1
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 5.5e-29 133.3 470 25.7
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 5.9e-23 113.2 65 78.5
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 2.2e-14 84.7 55 72.7
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 2.5e-13 81.3 55 69.1
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 7.0e-08 63.2 367 24.0
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 7.0e-08 63.2 30 93.3


User provided reference genes

Program Settings