Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 3.6e-293 1010.7 484 100.0
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 7.4e-254 880.2 489 85.9
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.4e-251 871.3 496 82.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 5.9e-251 870.5 496 82.9
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.3e-242 842.8 492 80.9
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.2e-242 842.0 484 81.6
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 6.5e-242 840.5 492 81.1
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.1e-241 839.7 484 82.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.5e-241 838.6 492 80.5
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 3.2e-241 838.2 487 81.9
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.2e-240 836.3 484 81.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.6e-240 835.9 488 81.6
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.6e-240 835.9 484 81.6
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.1e-240 835.5 488 81.4
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 7.9e-240 833.6 487 80.9
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 1.0e-239 833.2 488 81.1
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 3.0e-239 831.6 484 79.3
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 3.0e-239 831.6 485 81.2
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 3.9e-239 831.2 485 81.0
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 8.8e-239 830.1 488 81.4
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 8.2e-237 823.5 484 81.0
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.1e-236 823.2 484 80.6
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.1e-236 823.2 521 76.6
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.8e-236 822.4 485 80.4
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-235 819.7 485 80.6
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.6e-235 819.3 485 80.6
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 4.5e-235 817.8 485 80.6
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.7e-235 817.0 484 81.6
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.7e-235 817.0 499 78.6
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.0e-234 816.6 484 79.3
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.0e-234 816.6 488 80.5
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.5e-234 813.5 484 79.5
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 8.5e-234 813.5 485 80.2
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 3.2e-233 811.6 484 79.1
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 4.2e-233 811.2 485 78.4
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 5.5e-233 810.8 485 78.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.5e-233 810.8 484 78.9
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.2e-232 809.7 489 78.7
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-232 809.3 484 79.3
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.6e-232 809.3 484 78.9
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 2.7e-232 808.5 484 79.1
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 3.6e-232 808.1 485 79.0
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.7e-232 807.7 484 79.1
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.1e-232 807.4 484 79.1
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 6.1e-232 807.4 485 78.8
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 8.0e-232 807.0 485 78.4
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.4e-231 806.2 573 69.1
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.0e-231 804.7 488 78.3
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 6.7e-231 803.9 492 78.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.8e-231 803.5 484 78.9
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.2e-230 803.1 492 78.0
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.5e-230 802.7 484 78.1
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 2.0e-230 802.4 484 78.5
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 5.7e-230 800.8 484 79.3
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 3.7e-229 798.1 510 75.5
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 4.8e-229 797.7 485 78.1
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.1e-228 796.6 465 81.5
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 5.3e-228 794.3 485 76.9
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 7.0e-228 793.9 484 77.1
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 2.7e-227 792.0 484 77.9
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.3e-226 789.6 485 77.1
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.3e-226 789.6 485 77.5
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.7e-226 789.3 475 78.5
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.8e-226 788.1 462 80.3
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.8e-226 788.1 486 77.0
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.5e-225 786.2 486 76.3
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 7.2e-225 783.9 579 67.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 4.7e-224 781.2 484 76.2
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 4.7e-224 781.2 485 75.5
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 4.7e-224 781.2 484 75.8
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.4e-223 779.6 485 76.1
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 5.2e-223 777.7 485 76.3
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 5.2e-223 777.7 484 75.8
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 6.8e-223 777.3 489 75.9
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.0e-222 775.8 489 75.9
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.4e-222 774.6 473 77.8
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 5.7e-222 774.2 490 75.5
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 4.8e-221 771.2 486 75.5
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 2.0e-219 765.8 568 66.7
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 6.5e-218 760.8 487 72.9
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.8e-216 755.4 485 73.6
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.4e-215 753.1 485 73.4
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.8e-215 752.7 484 73.1
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 4.0e-215 751.5 484 72.7
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 8.8e-215 750.4 484 73.1
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 4.4e-214 748.0 484 73.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.7e-213 746.1 484 72.3
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 2.2e-213 745.7 484 72.3
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.4e-212 743.0 485 72.2
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.4e-212 742.3 573 65.3
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.1e-212 741.9 484 71.7
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.1e-212 741.9 484 71.7
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 4.1e-212 741.5 484 72.3
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.6e-211 739.6 412 85.2
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 2.0e-211 739.2 484 74.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.5e-211 738.4 484 71.7
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 5.0e-210 734.6 484 71.1
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.9e-209 732.6 598 62.5
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.6e-208 729.6 509 68.8
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.0e-207 726.9 412 82.8
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.7e-205 719.5 541 65.6
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 7.8e-203 710.7 484 69.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.2e-198 696.8 493 68.2
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 6.4e-197 691.0 509 66.6
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.6e-195 684.9 452 74.6
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 9.5e-185 650.6 375 81.6
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.1e-183 645.6 433 71.8
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 7.1e-180 634.4 412 72.3
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.1e-177 627.1 488 61.5
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.2e-176 623.6 361 82.0
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.6e-176 622.1 496 58.9
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 8.1e-176 620.9 374 77.3
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.6e-174 615.9 489 61.3
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 4.4e-174 615.1 374 76.7
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 4.0e-167 592.0 328 84.8
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.5e-163 578.9 328 83.8
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.3e-162 576.2 482 58.7
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.3e-161 572.4 343 78.1
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.1e-160 569.7 328 82.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.1e-151 540.8 329 78.4
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.8e-146 523.5 335 75.5
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 5.1e-146 521.9 326 76.4
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 2.8e-144 516.2 362 69.3
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.5e-142 508.8 353 71.4
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-138 496.9 300 78.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 2.7e-131 473.0 329 70.8
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.7e-104 384.0 449 45.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-104 383.6 223 80.3
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 2.9e-101 373.2 396 48.5
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.1e-95 352.8 210 78.1
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 9.2e-95 351.7 231 71.4
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 8.6e-93 345.1 431 45.0
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.7e-80 303.1 186 76.3
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-77 293.1 160 85.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.9e-77 293.1 160 85.6
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-74 284.3 160 84.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 5.1e-69 266.2 146 83.6
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 9.9e-57 225.3 431 33.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-45 187.6 106 83.0
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.1e-43 181.0 106 79.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.4e-42 177.6 95 88.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.0e-42 175.6 94 88.3
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 3.2e-39 167.2 142 54.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 9.3e-39 165.6 117 70.1
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.4e-34 151.0 91 75.8
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.6e-25 120.9 67 85.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 5.5e-23 113.2 87 62.1
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.4e-21 108.6 76 68.4
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.3e-20 103.6 70 71.4
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-18 97.4 65 66.2
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.5e-17 95.1 69 66.7
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 2.6e-12 77.8 122 39.3
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.9e-08 64.3 123 34.1


User provided reference genes

Program Settings