Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 2.7e-123 445.3 214 100.0
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 8.2e-64 247.7 219 61.2
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 3.1e-63 245.7 220 62.3
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.7e-62 242.7 212 64.2
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 3.5e-62 242.3 207 62.3
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.7e-61 240.0 215 61.4
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 8.5e-61 237.7 214 65.4
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.2e-59 233.8 212 60.4
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.7e-59 232.6 191 63.4
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 5.2e-58 228.4 193 60.6
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 6.8e-58 228.0 211 58.3
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.2e-57 227.3 204 61.8
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.2e-57 227.3 214 59.8
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 4.4e-57 225.3 213 57.3
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.7e-56 223.4 127 78.0
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.8e-56 222.6 212 59.0
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.8e-56 222.6 197 59.9
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 3.7e-56 222.2 206 56.3
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 6.3e-56 221.5 181 60.2
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 8.3e-56 221.1 188 62.2
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 5.4e-55 218.4 217 55.8
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.0e-55 218.0 186 59.1
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.6e-54 216.9 219 54.3
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.0e-54 216.5 167 62.9
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 5.9e-54 214.9 211 56.4
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.2e-53 213.0 214 56.1
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.9e-53 212.6 211 55.5
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 3.8e-53 212.2 143 71.3
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 3.8e-53 212.2 143 71.3
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 8.5e-53 211.1 216 52.8
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 4.2e-52 208.8 205 55.1
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 4.2e-52 208.8 210 56.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.6e-51 206.8 197 56.3
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.1e-51 206.5 220 55.0
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.7e-51 206.1 213 54.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 6.1e-51 204.9 196 55.1
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.4e-50 203.8 183 59.0
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.4e-50 203.8 207 56.0
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.4e-50 203.8 215 54.4
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 3.0e-50 202.6 188 60.1
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 8.8e-50 201.1 178 58.4
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 5.7e-49 198.4 126 69.8
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 9.8e-49 197.6 205 55.1
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 9.8e-49 197.6 208 54.3
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.3e-48 197.2 210 53.8
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.2e-48 196.4 191 58.6
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 2.2e-48 196.4 208 52.4
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.4e-47 193.7 126 71.4
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 1.4e-47 193.7 191 54.5
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 2.4e-47 193.0 123 69.9
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.2e-46 190.7 194 53.6
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 2.7e-46 189.5 128 69.5
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 3.5e-46 189.1 198 51.5
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 4.5e-46 188.7 211 52.6
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 4.5e-46 188.7 208 51.4
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 5.9e-46 188.3 195 52.3
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 7.7e-46 188.0 92 85.9
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 1.0e-45 187.6 207 51.2
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.3e-45 187.2 163 58.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.7e-45 186.8 194 54.1
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 3.8e-45 185.7 218 49.5
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.8e-45 185.7 99 79.8
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 6.6e-45 184.9 122 68.0
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 6.6e-45 184.9 191 51.8
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 8.6e-45 184.5 129 66.7
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 8.6e-45 184.5 167 58.1
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 1.5e-44 183.7 196 54.1
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.5e-44 183.7 187 54.0
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.5e-44 183.7 180 53.9
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 1.5e-44 183.7 140 60.0
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.5e-44 183.0 139 61.9
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.3e-44 182.6 131 67.9
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 5.6e-44 181.8 121 67.8
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.6e-43 180.3 206 51.5
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.6e-43 180.3 194 51.0
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 4.7e-43 178.7 166 57.2
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.4e-42 177.2 180 52.2
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 1.4e-42 177.2 114 70.2
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.4e-42 177.2 184 53.3
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 3.0e-42 176.0 185 51.4
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 5.2e-42 175.3 111 70.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 8.9e-42 174.5 112 68.8
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.4e-41 172.6 181 52.5
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.5e-41 171.4 170 54.7
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 1.3e-40 170.6 181 51.9
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.7e-40 170.2 180 51.7
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.9e-40 168.7 166 54.8
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 8.3e-40 167.9 134 61.9
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.1e-39 167.5 180 49.4
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 4.1e-39 165.6 214 43.0
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 5.4e-39 165.2 186 50.0
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.0e-39 164.9 166 53.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.2e-38 164.1 139 61.2
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 7.3e-36 154.8 76 85.5
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.2e-35 151.8 171 52.0
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 8.0e-35 151.4 171 55.0
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 5.2e-34 148.7 152 54.6
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.5e-33 147.1 107 61.7
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 8.3e-32 141.4 192 42.7
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 7.0e-31 138.3 115 56.5
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 3.3e-28 129.4 168 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 7.3e-28 128.3 114 45.6
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 7.3e-28 128.3 116 53.4
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.8e-27 126.3 118 53.4
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 8.1e-27 124.8 214 43.9
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 3.1e-26 122.9 92 57.6
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 4.6e-22 109.0 74 66.2
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 1.1e-20 104.4 126 50.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.1e-18 96.3 148 45.9
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 3.4e-17 92.8 68 60.3
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.9e-16 89.7 70 62.9
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 3.8e-16 89.4 140 47.1
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.1e-10 71.2 68 52.9
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 5.2e-10 68.9 106 35.8
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 8.9e-10 68.2 133 35.3
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 2.4e-07 60.1 142 35.9


User provided reference genes

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