Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.3e-258 896.0 465 100.0
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.7e-167 593.2 466 67.4
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 3.9e-167 592.0 466 67.4
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.6e-165 586.6 467 66.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 4.7e-165 585.1 476 64.3
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 8.1e-165 584.3 471 65.2
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 8.1e-165 584.3 478 64.4
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 5.2e-164 581.6 471 65.2
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 5.2e-164 581.6 472 64.2
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 5.2e-164 581.6 468 66.0
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 8.9e-164 580.9 467 63.0
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 2.0e-163 579.7 463 65.2
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 2.0e-163 579.7 472 65.9
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 5.8e-163 578.2 474 64.1
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 7.6e-163 577.8 463 64.8
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 9.9e-163 577.4 471 65.2
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 9.9e-163 577.4 471 65.2
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 1.1e-161 573.9 495 61.8
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.1e-161 573.9 466 65.2
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.2e-161 572.4 469 64.6
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 5.4e-161 571.6 463 65.7
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 7.1e-161 571.2 501 61.9
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.2e-160 570.5 467 64.7
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 2.1e-160 569.7 470 63.0
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 3.5e-160 568.9 469 64.6
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.3e-159 566.2 472 63.6
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.3e-159 566.2 500 61.6
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 5.1e-159 565.1 468 64.3
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 6.6e-159 564.7 490 61.8
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 1.5e-158 563.5 462 64.3
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 1.9e-158 563.1 467 63.6
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 1.2e-157 560.5 491 61.3
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 1.2e-157 560.5 475 61.7
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 2.1e-157 559.7 468 62.6
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 6.2e-157 558.1 464 64.7
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 1.1e-156 557.4 459 63.6
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 2.4e-156 556.2 465 60.9
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.4e-156 556.2 462 63.4
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 2.4e-156 556.2 462 61.5
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 3.1e-156 555.8 462 62.3
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.0e-156 555.4 461 63.1
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.6e-155 552.7 462 63.0
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 2.6e-155 552.7 470 62.1
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 5.8e-155 551.6 461 62.9
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.8e-155 551.6 462 62.8
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 7.6e-155 551.2 456 63.2
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.3e-154 550.4 469 62.7
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 1.7e-154 550.1 459 62.5
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.7e-154 550.1 461 62.9
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.7e-154 550.1 474 62.9
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 2.2e-154 549.7 467 62.5
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.9e-154 549.3 465 62.4
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 1.9e-153 546.6 474 58.6
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.9e-153 546.6 463 61.1
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 2.4e-153 546.2 423 68.6
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 3.2e-153 545.8 469 61.2
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 9.3e-153 544.3 463 61.3
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 9.3e-153 544.3 469 63.3
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 9.3e-153 544.3 465 61.3
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 2.1e-152 543.1 487 60.6
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 3.5e-152 542.3 469 62.5
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 7.8e-152 541.2 467 61.0
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 2.3e-151 539.7 464 61.4
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 2.3e-151 539.7 464 61.4
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 1.1e-150 537.3 462 61.5
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.5e-150 537.0 465 60.0
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 1.9e-150 536.6 490 60.0
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 4.3e-150 535.4 476 59.5
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 5.6e-150 535.0 466 61.4
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 9.6e-150 534.3 464 59.7
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.3e-149 533.9 465 60.9
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.8e-148 530.0 463 61.1
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 3.1e-148 529.3 425 64.0
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 4.0e-148 528.9 468 60.7
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 9.0e-148 527.7 467 60.0
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 1.2e-147 527.3 467 60.8
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.6e-147 526.2 468 60.3
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.3e-146 523.9 440 63.0
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 4.2e-145 518.8 406 67.0
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 9.3e-145 517.7 466 59.4
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 6.2e-141 505.0 472 57.8
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 2.2e-138 496.5 467 58.9
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 1.4e-137 493.8 471 57.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.2e-137 492.7 468 57.5
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 5.5e-137 491.9 469 56.5
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.1e-134 484.2 480 53.8
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.3e-133 480.7 489 53.8
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.8e-133 479.6 427 60.9
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 3.9e-127 459.1 377 63.4
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.3e-125 454.1 469 52.0
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.3e-125 454.1 469 52.5
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.0e-122 444.5 374 61.8
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 7.9e-120 434.9 464 52.2
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 1.0e-119 434.5 325 68.6
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 3.0e-119 433.0 331 68.0
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.4e-116 424.1 360 61.7
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 5.3e-116 422.2 338 65.1
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 7.7e-115 418.3 479 47.0
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 8.2e-109 398.3 317 65.0
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.7e-106 390.6 517 46.6
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 5.5e-105 385.6 331 63.1
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 1.9e-97 360.5 321 61.4
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 1.0e-87 328.2 359 50.4
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.0e-86 323.9 349 52.1
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.4e-84 317.0 492 38.2
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 2.9e-82 310.1 297 58.9
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-81 307.4 270 61.9
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 1.2e-78 298.1 223 68.2
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.1e-73 281.6 427 40.0
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 3.3e-65 253.4 496 36.3
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 4.0e-63 246.5 347 45.0
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.5e-46 191.4 489 31.9
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 7.1e-44 182.6 156 62.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 2.4e-39 167.5 203 49.3
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 2.1e-32 144.4 504 26.8
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.4e-28 131.7 405 28.4
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 4.2e-28 130.2 375 33.1
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.0e-26 125.6 142 52.8
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 6.7e-26 122.9 131 54.2
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-21 108.2 484 24.6
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 2.2e-21 107.8 88 64.8
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.2e-19 102.1 81 56.8
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 2.1e-19 101.3 81 58.0
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 2.1e-19 101.3 82 59.8
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.1e-17 95.5 103 51.5
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 2.6e-14 84.3 103 51.5
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.8e-10 71.6 72 47.2
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 1.1e-09 68.9 72 45.8
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 7.6e-06 56.2 40 67.5


User provided reference genes

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