Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.1e-132 475.7 236 100.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 9.3e-101 370.5 223 83.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.7e-84 315.8 221 70.6
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 3.0e-83 312.4 220 70.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.0e-83 312.4 221 70.6
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.7e-83 311.2 225 68.4
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.5e-82 310.1 221 69.2
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.3e-82 308.5 221 68.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.3e-81 307.0 221 69.2
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-81 307.0 225 67.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.6e-81 306.6 221 68.8
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.7e-81 305.4 225 67.6
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 3.7e-81 305.4 225 67.6
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.8e-81 305.1 219 68.9
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 4.8e-81 305.1 221 67.9
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.3e-81 304.7 220 68.6
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 6.3e-81 304.7 219 68.9
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.1e-80 303.9 221 67.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.1e-80 303.9 221 67.9
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.4e-80 303.5 221 67.9
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.4e-80 303.5 219 68.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.4e-80 303.5 219 68.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.8e-80 303.1 225 67.6
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.8e-80 303.1 225 67.6
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 3.1e-80 302.4 221 66.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.3e-80 301.6 219 68.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.3e-80 301.6 219 69.9
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 6.9e-80 301.2 220 68.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.2e-79 300.4 221 66.5
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-79 300.4 221 66.5
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.2e-79 300.4 220 69.1
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.5e-79 300.1 221 66.5
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.5e-79 300.1 219 68.9
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.5e-79 300.1 219 68.9
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.5e-79 300.1 221 66.5
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.0e-79 299.7 221 67.0
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.0e-79 299.7 223 67.7
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 2.6e-79 299.3 221 66.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.6e-79 299.3 223 68.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 2.6e-79 299.3 220 68.2
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.6e-79 299.3 221 67.0
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 3.4e-79 298.9 221 67.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 3.4e-79 298.9 221 66.1
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.4e-79 298.9 225 66.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 3.4e-79 298.9 225 65.8
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.5e-79 298.5 221 67.4
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 4.5e-79 298.5 225 67.1
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 4.5e-79 298.5 221 67.4
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.9e-79 298.1 220 66.8
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.7e-79 297.7 225 65.8
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.7e-79 297.7 217 68.7
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.7e-79 297.7 221 67.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.0e-78 297.4 225 66.7
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.3e-78 297.0 219 68.0
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.3e-78 297.0 221 67.0
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.3e-78 297.0 224 66.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.3e-78 297.0 221 66.1
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.3e-78 297.0 221 67.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.7e-78 296.6 221 66.5
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.2e-78 296.2 221 66.1
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.9e-78 295.8 221 67.0
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 3.8e-78 295.4 221 66.5
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.8e-78 295.4 225 66.2
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.8e-78 295.4 224 65.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.8e-78 295.4 221 65.6
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 5.0e-78 295.0 221 65.6
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 5.0e-78 295.0 219 67.6
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 5.0e-78 295.0 221 65.6
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 6.5e-78 294.7 220 65.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.5e-78 294.7 221 66.1
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.5e-78 294.7 221 66.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 8.5e-78 294.3 221 65.6
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.1e-77 293.9 220 66.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.1e-77 293.9 221 65.2
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.1e-77 293.9 225 65.8
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.4e-77 293.5 217 66.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.4e-77 293.5 221 65.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.9e-77 293.1 221 65.6
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.5e-77 292.7 220 65.5
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.5e-77 292.7 221 64.3
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.5e-77 292.7 223 66.4
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.5e-77 292.7 225 65.3
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.5e-77 292.7 221 65.2
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.2e-77 292.0 225 64.4
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.2e-77 292.0 225 64.9
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.2e-77 291.2 225 63.1
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.2e-76 290.4 221 66.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.6e-76 290.0 225 62.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-76 290.0 225 64.4
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.1e-76 289.7 233 64.8
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-76 289.3 221 65.6
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.7e-76 289.3 222 64.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.6e-76 288.9 225 64.9
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.6e-76 288.9 221 64.7
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.1e-76 288.1 222 64.0
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.1e-76 288.1 242 62.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 7.9e-76 287.7 222 63.5
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 7.9e-76 287.7 225 64.4
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.0e-75 287.3 178 82.6
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.0e-75 287.3 221 63.8
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.0e-75 287.3 221 64.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.0e-75 287.3 242 62.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.8e-75 286.6 247 60.7
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.0e-75 285.8 221 63.8
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.9e-75 285.4 225 64.0
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.9e-75 285.4 221 63.3
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.1e-75 285.0 221 62.9
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.7e-75 284.6 225 63.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.0e-74 283.1 221 64.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 9.7e-74 280.8 220 64.1
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 9.7e-74 280.8 225 62.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.7e-74 280.8 221 63.8
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.7e-74 280.8 221 63.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 9.7e-74 280.8 223 62.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-73 280.0 258 57.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.7e-73 280.0 221 63.3
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.2e-73 279.6 227 63.0
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 4.8e-73 278.5 221 62.9
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.8e-73 278.5 221 62.9
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 4.8e-73 278.5 303 51.2
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 4.8e-73 278.5 221 62.0
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 6.3e-73 278.1 221 64.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 6.3e-73 278.1 221 64.3
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 6.3e-73 278.1 222 63.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 8.2e-73 277.7 221 62.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 9.1e-72 274.2 221 63.3
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.5e-71 273.5 221 62.9
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.4e-71 272.3 224 60.3
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.4e-71 272.3 221 62.4
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.8e-70 268.9 220 61.8
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-69 267.3 218 61.0
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 2.3e-67 259.6 223 62.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.3e-67 259.6 220 60.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.1e-67 258.5 225 59.1
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.5e-66 256.9 218 58.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.7e-66 255.0 204 62.3
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 7.4e-66 254.6 225 60.4
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.8e-65 252.7 219 58.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.9e-62 242.7 206 60.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.2e-60 237.3 220 53.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.2e-60 237.3 227 52.4
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 4.7e-60 235.3 226 52.7
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-59 233.8 166 68.1
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.7e-59 231.5 166 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.8e-57 226.1 220 53.2
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-54 217.2 180 61.1
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.1e-52 209.9 200 58.5
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.2e-50 204.1 168 59.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-50 202.2 154 66.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.7e-49 200.3 235 47.7
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.9e-45 186.8 141 63.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 3.6e-44 182.6 178 55.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.0e-43 179.1 127 66.9
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.3e-41 171.4 124 66.9
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.2e-39 167.5 145 57.9
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.2e-33 146.7 123 56.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.7e-33 146.0 232 38.4
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.1e-32 144.4 314 31.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-32 142.9 121 57.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.6e-31 140.6 229 36.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.6e-31 140.6 223 38.6
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 5.2e-27 125.6 86 70.9
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 8.9e-27 124.8 70 81.4
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-26 124.0 68 85.3
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.9e-24 117.1 128 50.8
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.9e-24 117.1 128 50.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.1e-24 115.9 70 75.7
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.6e-23 112.5 128 49.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.0e-22 109.0 102 58.8
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 6.6e-22 108.6 70 72.9
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.1e-21 107.8 70 74.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.3e-21 105.1 64 75.0
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.1e-16 88.6 70 62.9
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.7e-14 84.0 50 76.0


User provided reference genes

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