Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 1.5e-36 155.6 77 100.0
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 3.6e-17 91.3 45 88.9
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.3e-16 89.4 45 84.4
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.0e-16 88.2 45 84.4
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.0e-16 88.2 45 84.4
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 3.0e-16 88.2 45 82.2
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 84.4
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.9e-16 87.8 45 82.2
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 5.1e-16 87.4 45 80.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 6.7e-16 87.0 45 80.0
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 6.7e-16 87.0 45 80.0
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 6.7e-16 87.0 45 82.2
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 6.7e-16 87.0 45 80.0
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 6.7e-16 87.0 45 80.0
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 8.7e-16 86.7 45 80.0
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 8.7e-16 86.7 45 80.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-15 86.3 45 80.0
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 1.1e-15 86.3 45 80.0
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.1e-15 86.3 45 80.0
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 1.1e-15 86.3 45 82.2
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 80.0
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 1.5e-15 85.9 44 81.8
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.5e-15 85.9 45 77.8
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.5e-15 85.9 45 77.8
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 80.0
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.9e-15 85.5 45 77.8
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 2.5e-15 85.1 44 79.5
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 80.0
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.5e-15 85.1 45 77.8
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 2.5e-15 85.1 44 79.5
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 77.8
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 75.6
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 3.3e-15 84.7 45 75.6
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 4.3e-15 84.3 45 75.6
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.3e-15 84.3 45 75.6
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 4.3e-15 84.3 45 77.8
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 4.3e-15 84.3 45 75.6
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 4.3e-15 84.3 45 80.0
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 5.7e-15 84.0 45 75.6
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 5.7e-15 84.0 45 75.6
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.7e-15 84.0 44 77.3
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.7e-15 84.0 45 75.6
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 5.7e-15 84.0 45 75.6
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 7.4e-15 83.6 45 73.3
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 7.4e-15 83.6 45 77.8
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 7.4e-15 83.6 44 77.3
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 7.4e-15 83.6 44 77.3
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 7.4e-15 83.6 45 75.6
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 9.7e-15 83.2 45 75.6
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 9.7e-15 83.2 45 75.6
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 9.7e-15 83.2 45 75.6
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.3e-14 82.8 45 73.3
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 1.3e-14 82.8 45 73.3
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 1.3e-14 82.8 45 73.3
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-14 82.8 45 75.6
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 1.3e-14 82.8 45 75.6
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.6e-14 82.4 45 73.3
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.6e-14 82.4 45 77.8
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.2e-14 82.0 44 75.0
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.2e-14 82.0 44 75.0
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 2.8e-14 81.6 42 78.6
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 3.7e-14 81.3 45 73.3
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 8.2e-14 80.1 45 71.1
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 8.2e-14 80.1 45 75.6
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 1.1e-13 79.7 44 75.0
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 1.8e-13 79.0 45 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 6.9e-13 77.0 45 71.1
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 6.9e-13 77.0 45 71.1
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 9.1e-13 76.6 44 70.5
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 1.5e-12 75.9 44 68.2
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 3.4e-12 74.7 45 68.9
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 4.5e-12 74.3 44 70.5
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.3e-11 72.8 45 68.9
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 4.2e-10 67.8 35 77.1
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 5.5e-10 67.4 35 74.3
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 7.2e-10 67.0 35 74.3
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 7.2e-10 67.0 42 61.9
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 8.8e-08 60.1 35 65.7
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 2.6e-07 58.5 42 54.8


User provided reference genes

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