Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 1.3e-123 448.0 234 100.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.2e-60 238.8 204 61.3
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 2.6e-60 237.7 204 61.3
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 3.4e-60 237.3 201 62.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 3.2e-58 230.7 217 57.6
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 4.6e-57 226.9 205 59.5
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 1.0e-56 225.7 201 59.7
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.3e-53 214.5 234 52.1
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 2.3e-53 214.5 234 52.1
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 6.8e-53 213.0 222 53.2
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 2.0e-52 211.5 210 54.8
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 3.9e-48 197.2 214 48.6
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 3.9e-48 197.2 230 47.4
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 8.6e-48 196.1 190 52.1
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 1.6e-46 191.8 184 54.3
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 6.2e-46 189.9 226 48.7
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 1.4e-45 188.7 217 47.5
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 1.8e-45 188.3 199 49.2
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 1.8e-45 188.3 199 49.2
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 5.2e-45 186.8 184 51.6
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.5e-44 185.3 223 44.4
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 2.2e-43 181.4 206 45.6
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 4.9e-43 180.3 201 47.3
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 8.3e-43 179.5 188 47.3
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 1.9e-42 178.3 182 52.2
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 1.9e-42 178.3 220 45.9
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.2e-42 177.6 198 48.5
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 5.4e-42 176.8 178 52.8
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 7.1e-42 176.4 198 47.5
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 2.7e-41 174.5 207 44.4
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 2.7e-41 174.5 201 47.8
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.0e-40 172.6 228 46.1
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.7e-40 171.8 195 47.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.7e-40 171.8 182 48.4
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 3.9e-40 170.6 228 45.6
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 3.9e-40 170.6 232 42.2
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 3.9e-40 170.6 186 48.9
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 3.9e-40 170.6 213 41.8
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.5e-39 168.7 189 48.1
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.5e-39 168.7 229 43.2
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.9e-39 168.3 207 45.9
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 1.9e-39 168.3 198 46.5
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 3.3e-39 167.5 206 46.6
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 3.3e-39 167.5 215 40.9
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 3.3e-39 167.5 225 42.7
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 7.3e-39 166.4 205 43.9
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 7.3e-39 166.4 208 46.2
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 1.6e-38 165.2 167 52.7
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 2.1e-38 164.9 215 41.4
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 2.8e-38 164.5 204 48.0
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 3.6e-38 164.1 212 45.3
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 6.2e-38 163.3 174 51.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.4e-37 162.2 227 41.9
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.4e-37 162.2 226 43.8
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.4e-37 162.2 226 43.8
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.4e-37 162.2 226 43.8
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.8e-37 161.8 196 46.4
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.8e-37 161.8 167 53.3
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 2.4e-37 161.4 225 40.9
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 2.4e-37 161.4 187 46.5
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 2.6e-36 157.9 209 40.7
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 3.4e-36 157.5 177 44.6
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 4.4e-36 157.1 187 45.5
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 9.9e-36 156.0 203 42.4
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 6.4e-35 153.3 202 45.0
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.4e-34 152.1 204 44.1
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 9.2e-34 149.4 197 44.2
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-33 149.1 189 42.3
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 2.3e-32 144.8 202 42.1
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 2.3e-32 144.8 184 46.2
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.9e-31 141.7 234 35.9
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.5e-31 141.4 192 40.6
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 9.6e-31 139.4 146 45.9
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.2e-30 139.0 226 38.9
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-30 138.3 169 42.6
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 2.1e-30 138.3 188 40.4
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 1.1e-29 136.0 176 44.9
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 6.9e-29 133.3 184 42.9
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 9.0e-29 132.9 159 43.4
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 9.0e-29 132.9 153 45.1
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 1.5e-28 132.1 190 42.1
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.4e-28 130.6 192 40.1
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 2.9e-27 127.9 208 38.5
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 7.1e-26 123.2 146 43.8
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 2.1e-25 121.7 188 36.2
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 3.3e-23 114.4 194 39.2
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 2.8e-22 111.3 183 37.2
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 9.9e-20 102.8 161 41.0
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-17 95.1 72 55.6
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 6.0e-17 93.6 157 35.0
PSO384G4964 Papaver somniferum HOM05D007083 ORTHO05D008801 2.3e-16 91.7 214 30.4
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 9.6e-15 86.3 70 54.3
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 1.4e-13 82.4 146 38.4
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.8e-12 77.0 219 29.2
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.6e-12 76.6 167 31.7
Migut.M01318 Erythranthe guttata HOM05D002890 ORTHO05D009847 3.8e-11 74.3 165 29.1
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 8.4e-11 73.2 167 28.1
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 2.5e-10 71.6 56 55.4
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 4.2e-10 70.9 169 27.8
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 9.3e-10 69.7 160 28.8
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-09 68.6 46 67.4
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 3.5e-09 67.8 217 29.5
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 7.9e-09 66.6 46 63.0
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 1.0e-08 66.2 212 25.9
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 1.0e-08 66.2 54 55.6
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.8e-08 65.5 214 31.3
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 1.8e-08 65.5 191 27.7
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 3.9e-08 64.3 172 27.3
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 3.9e-08 64.3 178 27.0
Cc02_g18070 Coffea canephora HOM05D007675 ORTHO05D009699 8.7e-08 63.2 226 27.9
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 8.7e-08 63.2 170 28.8
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 8.7e-08 63.2 45 57.8
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 8.7e-08 63.2 45 57.8
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 1.1e-07 62.8 169 25.4
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 1.5e-07 62.4 169 26.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.9e-07 62.0 165 27.3
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-07 62.0 45 55.6
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-07 62.0 45 55.6
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.5e-07 61.6 171 28.1
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 2.5e-07 61.6 171 28.1
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 2.5e-07 61.6 212 27.4
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.3e-07 61.2 117 32.5
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 3.3e-07 61.2 45 57.8
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 3.3e-07 61.2 154 27.3
Prupe.2G064100 Prunus persica HOM05D002890 ORTHO05D009847 4.3e-07 60.8 168 28.6
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 5.6e-07 60.5 173 27.7
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 5.6e-07 60.5 165 26.1
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 7.4e-07 60.1 165 27.3
Dinv13895 Davidia involucrata HOM05D002975 ORTHO05D003564 7.4e-07 60.1 162 27.8
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 7.4e-07 60.1 168 25.0
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 9.6e-07 59.7 163 25.8
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 9.6e-07 59.7 165 25.5
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 9.6e-07 59.7 206 25.2
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 1.3e-06 59.3 172 26.2
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 1.3e-06 59.3 169 25.4
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 1.3e-06 59.3 200 26.0
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 1.3e-06 59.3 168 24.4
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.6e-06 58.9 154 26.0
MELO3C021959.2 Cucumis melo HOM05D007675 ORTHO05D009699 1.6e-06 58.9 224 26.3
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 2.8e-06 58.2 191 25.1
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 2.8e-06 58.2 169 24.9
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 2.8e-06 58.2 169 24.9
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 2.8e-06 58.2 169 24.9
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 2.8e-06 58.2 183 24.6
vmacro17185 Vaccinium macrocarpon HOM05D007496 ORTHO05D009479 2.8e-06 58.2 185 26.5
MD13G1010200 Malus domestica HOM05D007496 ORTHO05D009479 3.7e-06 57.8 196 26.0
COL.COLO4_31777 Corchorus olitorius HOM05D002890 ORTHO05D009847 4.8e-06 57.4 171 28.7
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 4.8e-06 57.4 212 27.8
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 4.8e-06 57.4 193 24.4
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 4.8e-06 57.4 201 24.9
Atru.chr5.2909 Acer truncatum HOM05D007675 ORTHO05D009699 6.2e-06 57.0 190 26.3
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 6.2e-06 57.0 217 24.4
SGA_v2.0_scaffold7G03840 Striga asiatica HOM05D002890 ORTHO05D009847 6.2e-06 57.0 168 28.0


User provided reference genes

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