Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 2.3e-145 518.8 262 100.0
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 8.2e-82 307.8 252 57.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 4.1e-81 305.4 254 57.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 3.5e-80 302.4 252 58.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.3e-79 300.4 257 55.6
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.0e-79 298.5 254 57.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 5.0e-79 298.5 254 57.1
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 8.5e-79 297.7 256 56.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 1.4e-78 297.0 248 58.5
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 7.2e-78 294.7 250 54.8
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 9.4e-78 294.3 253 58.1
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.1e-77 293.1 256 55.5
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 4.7e-77 292.0 262 54.6
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.0e-76 290.8 249 57.4
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.2e-76 288.5 256 55.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.6e-75 286.2 256 54.3
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.3e-75 285.8 251 56.6
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.3e-75 285.8 258 52.3
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.3e-74 283.9 257 53.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.3e-74 283.9 233 59.7
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.2e-74 283.1 266 54.5
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 8.2e-74 281.2 256 53.9
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.1e-73 280.8 244 58.2
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.4e-73 280.4 256 55.1
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 5.3e-73 278.5 239 55.6
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 7.0e-73 278.1 245 55.5
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.6e-72 276.9 251 56.6
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.0e-72 276.6 241 57.7
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.6e-72 276.2 243 58.4
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.5e-72 275.4 234 58.5
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.0e-71 274.2 272 51.5
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.0e-71 274.2 239 58.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.8e-71 272.3 238 55.5
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.5e-71 271.6 243 53.9
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.5e-71 271.2 255 51.8
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.2e-70 268.1 256 52.3
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.2e-69 267.3 223 57.0
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.2e-69 267.3 252 49.6
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.7e-69 265.4 255 50.6
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 6.1e-69 265.0 235 56.6
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 8.0e-69 264.6 257 52.5
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 8.0e-69 264.6 235 56.6
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 8.0e-69 264.6 236 54.7
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-68 263.5 257 52.5
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.3e-68 263.1 248 54.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.2e-68 261.9 254 52.4
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 6.8e-68 261.5 247 51.8
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.3e-66 257.3 254 51.6
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 2.2e-66 256.5 240 52.9
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.8e-66 256.1 245 53.1
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 2.8e-66 256.1 238 52.9
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.7e-66 255.8 235 51.9
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 8.3e-66 254.6 233 53.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 8.3e-66 254.6 245 52.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.4e-65 253.8 259 50.6
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.8e-65 253.4 239 51.9
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.4e-65 253.1 238 54.6
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 4.1e-65 252.3 256 50.4
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 5.3e-65 251.9 226 53.5
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 5.3e-65 251.9 239 51.5
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 7.0e-65 251.5 247 49.8
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 9.1e-65 251.1 229 57.2
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.0e-64 250.0 229 56.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.5e-64 249.2 249 50.6
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 4.5e-64 248.8 252 50.4
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.2e-63 246.5 242 53.7
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 2.9e-63 246.1 238 52.5
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.8e-63 245.7 229 55.9
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.8e-63 245.7 237 53.6
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 5.0e-63 245.4 236 53.4
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 6.5e-63 245.0 241 52.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 6.5e-63 245.0 223 55.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 2.5e-62 243.0 242 53.7
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 3.2e-62 242.7 237 52.3
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.5e-62 241.9 221 54.8
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 5.5e-62 241.9 248 49.2
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.2e-62 241.5 234 49.6
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.2e-62 241.5 234 49.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.1e-61 240.0 249 48.2
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.1e-61 240.0 191 60.2
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-61 240.0 239 51.0
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.0e-60 237.7 240 52.1
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 1.0e-60 237.7 238 51.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 1.4e-60 237.3 247 47.8
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.8e-60 236.9 247 48.6
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 2.3e-60 236.5 247 47.4
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.2e-60 235.3 238 51.3
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.2e-59 234.2 253 47.8
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 4.4e-59 232.3 264 45.1
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 5.7e-59 231.9 239 48.5
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 3.7e-58 229.2 263 46.0
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.7e-58 229.2 235 48.5
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 8.3e-58 228.0 257 46.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.1e-57 227.6 232 48.7
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-56 224.2 238 47.1
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 4.5e-56 222.2 255 45.1
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 4.5e-56 222.2 256 45.3
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 4.5e-56 222.2 254 44.9
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.5e-56 222.2 248 45.6
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.3e-55 220.7 237 46.4
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.3e-55 220.7 256 44.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.3e-55 220.7 237 46.4
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.7e-55 220.3 220 49.5
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.7e-55 220.3 216 50.9
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 6.6e-55 218.4 236 46.6
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 8.6e-55 218.0 244 44.7
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 1.5e-54 217.2 238 46.6
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.9e-54 216.9 240 47.1
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 3.3e-54 216.1 247 46.6
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.3e-54 216.1 212 50.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 4.2e-54 215.7 263 44.9
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 4.2e-54 215.7 263 44.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 5.5e-54 215.3 237 44.7
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.2e-53 214.2 186 55.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.2e-53 214.2 186 55.9
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 3.6e-53 212.6 236 45.8
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.0e-52 211.1 247 46.2
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.0e-52 211.1 247 46.2
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.4e-52 210.7 240 44.2
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 8.9e-52 208.0 244 45.1
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 3.4e-51 206.1 229 46.3
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 2.8e-50 203.0 180 57.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.7e-50 202.6 165 61.2
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.9e-50 202.2 283 41.0
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 8.3e-50 201.4 241 47.3
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.1e-49 201.1 208 50.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 4.5e-48 195.7 96 97.9
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 7.8e-48 194.9 205 48.8
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.3e-47 194.1 235 42.6
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 1.6e-45 187.2 209 45.9
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.1e-44 183.0 237 42.6
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 2.2e-42 176.8 209 47.4
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 5.4e-41 172.2 216 44.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.0e-40 170.2 195 47.7
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 4.3e-38 162.5 236 39.0
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 4.3e-38 162.5 242 38.8
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.2e-35 154.5 162 48.1
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.1e-32 143.7 97 64.9
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 6.0e-32 142.1 195 45.1
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 8.1e-29 131.7 145 51.0
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.9e-26 123.2 91 63.7
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 8.3e-26 121.7 188 39.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.1e-25 119.4 109 49.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 7.8e-24 115.2 172 40.1
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 8.6e-23 111.7 86 62.8
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 2.1e-21 107.1 134 42.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 3.8e-18 96.3 78 55.1
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 6.4e-18 95.5 257 28.8
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 2.4e-17 93.6 143 37.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 9.3e-17 91.7 100 45.0
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.6e-11 72.0 55 60.0


User provided reference genes

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