Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.6e-44 181.8 100 100.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 9.9e-20 100.1 93 64.5
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 2.9e-19 98.6 91 62.6
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.4e-18 95.5 93 63.4
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.2e-17 93.2 95 56.8
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.5e-17 91.7 87 60.9
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 6.0e-17 90.9 83 65.1
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.3e-16 89.7 91 58.2
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.8e-16 89.4 92 58.7
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.8e-16 89.4 94 62.8
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-16 89.4 94 55.3
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.8e-16 89.4 94 64.9
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 2.3e-16 89.0 93 57.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.7e-16 87.4 94 55.3
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 8.7e-16 87.0 92 58.7
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.1e-15 86.7 94 54.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.1e-15 86.7 93 60.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.5e-15 86.3 92 58.7
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.5e-15 86.3 93 54.8
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.9e-15 85.9 93 54.8
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.5e-15 85.5 94 57.4
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 2.5e-15 85.5 89 59.6
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 4.3e-15 84.7 92 58.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 4.3e-15 84.7 90 58.9
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 4.3e-15 84.7 92 56.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 5.6e-15 84.3 93 57.0
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.4e-15 84.0 96 54.2
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.4e-15 84.0 92 63.0
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.6e-14 82.8 93 53.8
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.6e-14 82.8 93 54.8
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.6e-14 82.8 93 55.9
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 2.1e-14 82.4 95 58.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.1e-14 82.4 96 53.1
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 2.1e-14 82.4 91 56.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 2.8e-14 82.0 93 58.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 2.8e-14 82.0 92 55.4
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 4.8e-14 81.3 93 54.8
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 4.8e-14 81.3 96 58.3
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.1e-13 80.1 93 52.7
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.4e-13 79.7 95 51.6
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.4e-13 79.7 96 52.1
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.8e-13 79.3 93 54.8
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.8e-13 79.3 95 55.8
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.4e-13 79.0 93 54.8
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 3.1e-13 78.6 84 58.3
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.0e-13 78.2 75 58.7
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 6.9e-13 77.4 94 52.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 6.9e-13 77.4 94 53.2
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.6e-12 75.5 81 56.8
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 3.4e-12 75.1 96 51.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 3.4e-12 75.1 96 51.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.5e-12 74.7 93 55.9
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.5e-12 74.7 93 55.9
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.5e-12 74.7 93 55.9
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 5.8e-12 74.3 96 53.1
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 5.8e-12 74.3 96 52.1
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 7.6e-12 73.9 91 51.6
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.0e-11 73.6 93 51.6
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.0e-11 73.6 93 53.8
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.7e-11 72.8 95 51.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.7e-11 72.8 94 53.2
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.7e-11 72.8 91 51.6
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 4.9e-11 71.2 92 53.3
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 6.5e-11 70.9 80 55.0
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 6.5e-11 70.9 93 51.6
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 6.5e-11 70.9 46 76.1
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 8.4e-11 70.5 91 48.4
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 8.4e-11 70.5 91 50.5
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 8.4e-11 70.5 94 52.1
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 8.4e-11 70.5 94 52.1
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.9e-10 69.3 92 51.1
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.9e-10 69.3 66 63.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.5e-10 68.9 91 50.5
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 3.2e-10 68.6 96 50.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 4.2e-10 68.2 92 51.1
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 4.2e-10 68.2 86 54.7
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 5.5e-10 67.8 92 51.1
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 5.5e-10 67.8 84 53.6
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 7.1e-10 67.4 94 50.0
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 9.3e-10 67.0 80 56.2
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 9.3e-10 67.0 94 45.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.2e-09 66.6 93 47.3
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.6e-09 66.2 83 54.2
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.6e-09 66.2 90 51.1
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.1e-09 65.9 80 53.8
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.1e-09 65.9 80 53.8
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 2.7e-09 65.5 46 71.7
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.7e-09 65.5 82 54.9
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 3.5e-09 65.1 93 45.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.5e-09 65.1 84 54.8
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 3.5e-09 65.1 93 49.5
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 4.6e-09 64.7 91 47.3
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 6.0e-09 64.3 78 51.3
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 1.3e-08 63.2 85 50.6
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.3e-08 63.2 40 77.5
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 1.8e-08 62.8 93 44.1
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 2.3e-08 62.4 82 51.2
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.3e-08 62.4 82 53.7
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 3.0e-08 62.0 93 49.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 3.9e-08 61.6 80 53.8
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 3.9e-08 61.6 93 46.2
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 5.1e-08 61.2 93 51.6
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 5.1e-08 61.2 92 47.8
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 1.1e-07 60.1 92 50.0
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.5e-07 59.7 93 48.4
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.9e-07 59.3 85 44.7
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 2.5e-07 58.9 92 48.9
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 4.3e-07 58.2 95 46.3
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.6e-06 56.2 34 79.4
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.1e-06 55.8 46 58.7
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 2.1e-06 55.8 94 45.7
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 3.7e-06 55.1 95 48.4
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 3.7e-06 55.1 91 44.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 6.2e-06 54.3 93 44.1
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 8.2e-06 53.9 89 40.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 8.2e-06 53.9 53 54.7


User provided reference genes

Program Settings