Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 0.0e+00 1366.3 691 100.0
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.3e-110 404.8 765 37.4
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 9.7e-106 388.7 702 38.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 3.8e-102 376.7 758 39.1
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 4.2e-101 373.2 705 38.6
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.4e-99 368.2 699 37.5
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.5e-95 354.8 704 37.9
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.0e-95 354.4 723 36.4
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.0e-95 354.4 706 37.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 3.4e-95 353.6 740 36.8
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 5.9e-95 352.8 708 38.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 8.5e-94 349.0 628 38.4
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.5e-93 347.4 513 44.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 4.2e-93 346.7 707 38.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.2e-92 345.1 723 36.5
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.6e-92 344.7 741 35.8
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 5.1e-91 339.7 733 36.4
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.4e-88 331.6 711 37.8
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 6.1e-84 316.2 574 39.2
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 3.9e-83 313.5 395 49.6
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 8.8e-83 312.4 762 33.5
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.6e-82 310.8 753 33.3
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.4e-82 309.3 693 34.3
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 9.7e-82 308.9 746 33.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.3e-81 308.5 487 43.1
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 6.3e-81 306.2 746 34.0
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.4e-80 305.1 753 33.9
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.8e-80 304.7 727 33.4
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.6e-79 300.8 725 34.8
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 6.5e-78 296.2 576 39.1
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 4.2e-77 293.5 730 34.2
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.4e-74 283.5 679 33.9
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 6.3e-73 279.6 739 33.2
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.8e-72 278.1 812 30.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 6.5e-70 269.6 723 33.2
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.5e-69 268.5 739 32.3
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 4.2e-69 266.9 706 33.4
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.1e-68 264.6 575 35.0
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 6.1e-68 263.1 511 37.6
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.8e-67 261.5 480 41.2
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.5e-66 256.1 599 35.7
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.3e-65 255.4 701 31.0
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.7e-65 255.0 730 31.6
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.1e-64 252.3 462 38.5
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.8e-64 251.5 769 30.8
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.4e-64 250.0 721 31.5
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.5e-61 240.0 399 39.8
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 7.2e-61 239.6 718 30.5
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 4.7e-60 236.9 735 29.9
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.8e-59 235.0 686 32.8
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.3e-59 234.6 704 32.7
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-58 232.3 501 35.7
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 3.4e-58 230.7 762 31.4
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 9.8e-58 229.2 512 34.4
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-57 227.3 545 36.1
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-57 227.3 686 32.2
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 6.3e-57 226.5 467 35.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.6e-55 221.9 704 32.2
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.0e-55 221.5 754 28.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.5e-55 220.3 706 29.9
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 5.9e-55 219.9 739 31.5
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.9e-55 219.9 466 38.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.3e-54 218.8 510 35.7
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.6e-52 210.7 685 30.1
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 6.8e-51 206.5 539 34.1
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 8.9e-51 206.1 582 31.6
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.0e-50 204.9 224 49.1
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 4.4e-50 203.8 751 28.8
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.4e-50 203.8 469 35.4
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 4.4e-50 203.8 604 31.1
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.3e-49 202.2 231 48.5
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 8.3e-49 199.5 545 31.6
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.4e-48 198.7 476 34.5
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.4e-48 198.0 763 28.3
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 7.0e-48 196.4 718 29.7
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.6e-47 195.3 493 33.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 2.7e-47 194.5 497 33.0
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 6.0e-47 193.4 758 28.4
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.0e-46 192.6 328 39.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.7e-46 191.8 495 34.9
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.6e-44 185.3 540 31.9
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.6e-44 185.3 746 28.8
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.2e-42 179.1 443 34.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 9.2e-40 169.5 722 26.7
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 2.1e-39 168.3 231 45.5
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 5.1e-38 163.7 765 28.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.3e-37 161.0 718 27.0
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.2e-36 159.1 729 28.4
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.4e-35 155.6 460 33.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 1.7e-33 148.7 481 28.3
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.1e-32 146.0 368 34.5
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 4.1e-32 144.1 368 34.5
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 1.0e-30 139.4 223 43.5
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.3e-25 122.5 250 38.0
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 4.2e-24 117.5 315 36.8
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 9.3e-24 116.3 535 26.9
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 4.6e-23 114.0 508 25.4
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.3e-21 107.8 343 31.8
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.3e-20 105.9 215 40.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.4e-19 102.4 348 30.7
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.4e-19 102.4 101 52.5
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.4e-19 101.7 376 28.7
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.1e-19 101.3 397 28.2
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 3.1e-19 101.3 400 28.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 4.0e-19 100.9 354 30.5
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.2e-18 99.4 349 30.9
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.3e-17 95.9 355 30.4
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.9e-17 94.0 333 29.4
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.4e-16 92.4 341 28.4
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.9e-16 92.0 342 29.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.9e-16 92.0 342 29.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-16 92.0 172 37.2
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.9e-16 92.0 403 27.0
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.4e-16 91.7 236 31.4
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-15 89.0 342 28.7
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 3.5e-15 87.8 342 28.4
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 3.5e-15 87.8 342 28.4
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 5.1e-14 84.0 346 29.2
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.1e-13 82.8 323 29.7
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-13 82.4 349 28.9
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.5e-13 82.4 349 28.9
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-13 82.4 349 28.9
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 2.0e-10 72.0 390 29.0
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.6e-10 71.6 301 24.3
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 2.2e-09 68.6 235 28.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 7.1e-08 63.5 56 60.7
Nitab4.5_0007728g0030 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.7e-07 61.6 106 39.6
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 4.6e-07 60.8 217 25.3
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 6.0e-07 60.5 72 38.9
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.8e-06 58.9 193 30.6
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 5.1e-06 57.4 201 27.9
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 6.7e-06 57.0 97 33.0


User provided reference genes

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