Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 7.5e-104 380.6 198 100.0
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.1e-85 319.3 197 83.8
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.0e-84 317.0 198 81.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.7e-84 316.2 197 81.2
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.7e-84 316.2 197 81.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.0e-84 315.5 198 81.3
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 5.1e-84 314.7 197 81.2
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 6.6e-84 314.3 198 80.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 6.6e-84 314.3 198 80.8
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.7e-84 313.9 197 80.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.1e-83 313.5 197 81.7
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.3e-83 312.0 199 79.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 3.3e-83 312.0 197 81.7
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 4.3e-83 311.6 197 79.7
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 4.3e-83 311.6 197 79.2
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 4.3e-83 311.6 197 77.7
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 5.6e-83 311.2 197 81.2
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.6e-83 311.2 197 80.2
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 7.3e-83 310.8 197 79.7
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 9.6e-83 310.5 197 81.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.6e-83 310.5 197 79.7
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 9.6e-83 310.5 197 79.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 9.6e-83 310.5 197 80.7
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.6e-82 309.7 197 80.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 2.1e-82 309.3 197 80.7
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.8e-82 308.1 197 78.7
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.8e-82 308.1 197 77.7
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 8.1e-82 307.4 197 79.7
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 8.1e-82 307.4 197 79.2
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.1e-81 307.0 197 78.7
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.8e-81 306.2 197 77.2
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.8e-81 306.2 197 79.7
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 3.1e-81 305.4 198 78.8
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 4.0e-81 305.1 197 78.2
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.2e-80 303.5 197 76.1
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.2e-80 303.5 197 78.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 2.0e-80 302.8 197 78.7
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.0e-80 302.8 197 76.6
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 5.8e-80 301.2 197 78.2
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 3.8e-79 298.5 197 75.6
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 6.4e-79 297.7 194 76.3
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 8.4e-79 297.4 197 76.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 8.4e-79 297.4 197 75.6
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.1e-78 297.0 197 75.1
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.4e-78 296.6 184 79.9
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.4e-78 296.6 197 75.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 2.4e-78 295.8 197 75.6
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.2e-78 295.0 197 74.1
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 5.4e-78 294.7 197 76.1
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 5.4e-78 294.7 197 76.6
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 7.1e-78 294.3 196 76.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.5e-77 292.0 197 74.1
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.5e-77 292.0 200 74.0
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.6e-77 291.6 200 73.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.6e-77 291.6 197 73.1
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 4.6e-77 291.6 198 72.7
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 6.0e-77 291.2 193 76.7
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 7.9e-77 290.8 198 72.7
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 7.9e-77 290.8 198 73.2
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.9e-77 290.8 200 74.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.0e-76 290.4 198 71.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.3e-76 290.0 219 69.4
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.3e-76 290.0 197 73.6
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 2.3e-76 289.3 197 73.1
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 3.0e-76 288.9 198 71.7
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.9e-76 288.5 198 71.7
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 3.9e-76 288.5 197 72.6
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.1e-76 288.1 198 71.2
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 5.1e-76 288.1 198 71.2
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 5.1e-76 288.1 197 73.1
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 6.6e-76 287.7 198 73.7
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.6e-76 287.7 196 71.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.1e-75 287.0 198 72.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.1e-75 287.0 198 71.2
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.1e-75 287.0 197 73.1
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.5e-75 286.6 208 72.6
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.5e-75 286.6 223 68.2
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.5e-75 286.6 196 72.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.9e-75 286.2 197 72.1
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.8e-74 282.3 208 71.2
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.6e-74 282.0 236 63.6
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.8e-73 279.6 196 73.0
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.8e-73 279.6 197 70.1
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.6e-72 274.2 193 74.6
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 9.9e-72 273.9 197 73.6
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.3e-71 273.5 195 74.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.9e-71 272.3 226 66.4
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 3.5e-69 265.4 167 82.6
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 3.0e-68 262.3 187 72.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.8e-66 255.8 167 77.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.9e-62 243.0 251 53.8
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.4e-57 226.1 186 64.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.1e-57 225.7 197 56.9
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 5.5e-54 214.9 187 63.1
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.5e-53 212.2 196 55.1
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.7e-50 202.2 193 55.4
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 4.8e-50 201.8 132 78.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.8e-50 201.8 193 55.4
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.3e-50 201.4 193 55.4
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 4.5e-48 195.3 196 58.2
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.0e-44 184.1 111 85.6
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-44 183.3 193 51.8
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.1e-43 180.6 114 80.7
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.5e-43 179.5 132 68.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 4.8e-42 175.3 145 63.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.5e-40 168.7 112 75.9
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-33 147.1 188 46.3
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 4.1e-33 145.6 176 50.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 9.1e-33 144.4 114 64.9
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-30 137.5 212 42.0
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 3.2e-30 136.0 214 42.1
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-29 134.0 176 46.6
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.6e-29 133.7 207 43.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 6.1e-29 131.7 104 69.2
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 8.2e-26 121.3 79 79.7
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 5.9e-24 115.2 71 78.9
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 7.2e-22 108.2 98 60.2
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-21 107.1 190 40.0
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.7e-21 105.5 76 69.7
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 6.8e-20 101.7 102 52.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 5.9e-16 88.6 147 40.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 6.5e-15 85.1 192 28.6
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.1e-14 84.3 196 28.1
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.9e-14 83.6 128 39.1
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 9.8e-11 71.2 193 28.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 6.3e-10 68.6 57 66.7
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 8.3e-10 68.2 51 68.6
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.2e-08 64.3 51 64.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-07 60.8 67 52.2
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 2.9e-07 59.7 139 29.5


User provided reference genes

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