Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 1.3e-66 256.1 124 100.0
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 8.0e-27 124.0 83 73.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.3e-26 122.5 83 71.1
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 4.0e-26 121.7 80 77.5
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.1e-25 120.2 97 60.8
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.1e-25 120.2 126 55.6
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.5e-25 119.8 121 55.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.5e-25 119.8 80 72.5
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 2.0e-25 119.4 120 55.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 2.0e-25 119.4 72 77.8
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.3e-25 118.6 82 69.5
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 4.4e-25 118.2 79 75.9
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.7e-25 117.9 114 58.8
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 9.7e-25 117.1 80 73.8
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 9.7e-25 117.1 79 73.4
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 9.7e-25 117.1 79 73.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.2e-24 115.9 115 53.9
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.8e-24 115.5 87 69.0
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.8e-24 114.8 82 69.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 6.3e-24 114.4 124 53.2
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 6.3e-24 114.4 80 70.0
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.3e-24 114.4 69 79.7
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 6.3e-24 114.4 79 72.2
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 8.2e-24 114.0 80 70.0
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.1e-23 113.6 74 77.0
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.1e-23 113.6 81 70.4
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.1e-23 113.6 83 68.7
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.4e-23 113.2 81 71.6
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.8e-23 112.8 86 67.4
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.8e-23 112.8 111 58.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 2.4e-23 112.5 68 80.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.4e-23 112.5 129 48.1
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 2.4e-23 112.5 90 64.4
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.4e-23 112.5 133 48.1
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.4e-23 112.5 71 76.1
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.1e-23 112.1 80 70.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 3.1e-23 112.1 73 75.3
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 3.1e-23 112.1 71 76.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.1e-23 112.1 73 74.0
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 4.1e-23 111.7 90 62.2
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 4.1e-23 111.7 79 69.6
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 5.3e-23 111.3 80 66.2
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 5.3e-23 111.3 80 67.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 5.3e-23 111.3 109 56.0
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 5.3e-23 111.3 80 68.8
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 5.3e-23 111.3 90 63.3
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 7.0e-23 110.9 79 68.4
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 7.0e-23 110.9 79 68.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 9.1e-23 110.5 75 70.7
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.6e-22 109.8 86 65.1
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.6e-22 109.8 86 65.1
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.6e-22 109.8 70 72.9
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.5e-22 108.6 70 72.9
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.5e-22 108.6 70 72.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 7.7e-22 107.5 78 66.7
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 7.7e-22 107.5 78 67.9
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.0e-21 107.1 74 68.9
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.3e-21 106.7 78 66.7
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.2e-21 105.9 69 72.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 3.8e-21 105.1 70 70.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 6.5e-21 104.4 70 70.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 6.5e-21 104.4 70 72.9
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 8.5e-21 104.0 70 70.0
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.5e-20 103.2 61 78.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 2.5e-20 102.4 70 70.0
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.2e-20 102.1 70 70.0
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 3.2e-20 102.1 70 70.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.2e-19 100.1 70 65.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.2e-19 100.1 70 65.7
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.1e-19 99.4 112 55.4
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 3.6e-19 98.6 118 45.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-19 98.2 72 69.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-19 98.2 72 69.4
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 4.7e-19 98.2 72 69.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 6.1e-19 97.8 71 69.0
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 1.8e-18 96.3 70 67.1
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.8e-18 96.3 92 52.2
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 3.0e-18 95.5 72 68.1
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 3.4e-17 92.0 70 60.0
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.0e-14 82.8 48 79.2
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.7e-13 79.7 100 43.0
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.5e-13 77.4 42 85.7
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 5.5e-12 74.7 45 75.6
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 9.4e-12 73.9 38 84.2
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.6e-11 73.2 67 56.7
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 4.7e-11 71.6 69 49.3
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 3.0e-10 68.9 42 66.7
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.2e-09 67.0 36 77.8
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.5e-09 66.6 127 36.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.6e-09 65.9 70 41.4
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 5.7e-09 64.7 57 50.9
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.8e-09 63.9 48 56.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.2e-08 62.8 48 54.2
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.8e-08 62.4 48 54.2
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.9e-08 61.6 104 42.3
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.4e-07 59.3 45 68.9
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.1e-07 58.9 52 53.8
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 4.1e-07 58.5 48 62.5
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 9.2e-07 57.4 119 34.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.2e-06 57.0 47 63.8
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-06 56.2 57 54.4
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-06 56.2 57 54.4
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 5.9e-06 54.7 57 45.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.9e-06 54.7 36 75.0
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 7.7e-06 54.3 52 59.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.7e-06 54.3 45 62.2


User provided reference genes

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