Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.0e-63 246.5 117 100.0
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 6.5e-55 217.2 117 85.5
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.1e-54 216.5 117 85.5
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.9e-54 215.7 115 85.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 7.2e-54 213.8 111 87.4
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.2e-53 213.0 117 83.8
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.2e-53 213.0 113 85.0
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.6e-53 212.6 113 85.0
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.6e-53 212.6 113 85.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.6e-53 212.6 113 86.7
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.7e-53 211.8 112 85.7
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.7e-53 211.8 115 80.9
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.7e-53 211.8 113 87.6
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 3.6e-53 211.5 113 86.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 84.2
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.7e-53 211.1 113 85.8
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.7e-53 211.1 113 85.8
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.0e-53 210.3 113 85.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 84.1
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 85.8
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 1.0e-52 209.9 117 82.9
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 83.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 1.4e-52 209.5 113 85.8
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.0e-52 208.4 113 85.0
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.0e-52 208.4 116 80.2
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 5.2e-52 207.6 113 83.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 5.2e-52 207.6 113 85.0
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 110 82.7
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 112 80.4
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.2e-51 206.5 113 83.2
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 118 80.5
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.0e-51 205.7 113 81.4
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.6e-51 205.3 118 82.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.3e-51 204.9 118 81.4
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 4.4e-51 204.5 113 82.3
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 5.7e-51 204.1 117 80.3
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 7.5e-51 203.8 113 84.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.3e-50 203.0 113 84.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.7e-50 202.6 112 78.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.2e-50 202.2 117 79.5
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 2.8e-50 201.8 109 85.3
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.8e-50 201.1 112 79.5
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 6.3e-50 200.7 117 79.5
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 6.3e-50 200.7 109 80.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.2e-50 200.3 113 81.4
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 8.2e-50 200.3 111 81.1
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.1e-49 199.9 113 82.3
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.1e-49 199.9 117 76.9
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.4e-49 199.5 116 79.3
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.4e-49 199.5 113 80.5
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 114 78.9
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 114 78.9
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.4e-49 198.7 116 78.4
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 3.1e-49 198.4 113 78.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 79.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 79.6
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.3e-49 197.6 113 78.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 5.3e-49 197.6 113 78.8
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 78.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 7.0e-49 197.2 113 78.8
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 9.1e-49 196.8 114 76.3
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 9.1e-49 196.8 114 77.2
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.1e-49 196.8 115 80.0
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.2e-48 196.4 118 77.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.6e-48 196.1 113 77.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-48 196.1 113 77.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.6e-48 196.1 113 77.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.6e-48 196.1 113 77.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.6e-48 196.1 113 77.9
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.0e-48 195.7 117 76.1
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.0e-48 195.7 111 79.3
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 77.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 77.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 3.5e-48 194.9 113 77.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 76.1
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 76.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 76.1
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 76.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 76.1
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.9e-48 194.1 115 79.1
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 78.8
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 7.7e-48 193.7 117 76.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 76.1
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 77.9
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-47 193.4 115 77.4
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.3e-47 193.0 100 87.0
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.7e-47 192.6 111 78.4
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.7e-47 192.6 111 77.5
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.9
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.9e-47 191.8 115 78.3
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 5.0e-47 191.0 112 78.6
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 75.2
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 76.1
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.5e-46 189.5 112 76.8
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 116 72.4
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 2.5e-46 188.7 129 71.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.2e-46 188.3 115 73.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.2e-46 188.0 111 78.4
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.6e-45 184.9 116 74.1
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.6e-45 184.9 116 74.1
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.0e-45 183.7 101 82.2
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.0e-44 183.3 105 79.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 4.0e-44 181.4 137 66.4
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 6.8e-44 180.6 103 79.6
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 1.2e-43 179.9 112 73.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.2e-43 179.9 104 78.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 2.0e-43 179.1 108 75.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.4e-43 178.3 110 73.6
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 3.4e-43 178.3 110 73.6
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.3e-42 176.4 148 58.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.2e-42 175.6 105 75.2
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.2e-42 175.6 99 81.8
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.4e-41 171.0 100 77.0
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.7e-39 166.0 182 51.1
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.9e-38 162.5 112 68.8
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 6.1e-37 157.5 100 70.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 7.5e-35 150.6 116 65.5
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 8.3e-34 147.1 86 79.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 1.4e-33 146.4 113 55.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.4e-33 145.6 113 58.4
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 4.1e-33 144.8 82 78.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.9e-31 138.7 112 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.2e-29 133.3 112 52.7
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 3.6e-29 131.7 113 55.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-26 120.6 112 46.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.4e-25 119.8 60 83.3
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.0e-25 117.5 63 79.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.9e-23 111.7 57 77.2
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.6e-23 110.9 80 66.2
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.5e-22 109.8 103 48.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 3.3e-22 108.6 58 77.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 3.3e-22 108.6 148 43.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.3e-22 108.6 101 49.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.7e-21 104.8 60 75.0
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 6.2e-21 104.4 113 47.8
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 1.4e-20 103.2 54 90.7
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.3e-20 102.4 57 87.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.6e-19 99.0 96 49.0
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.1e-17 93.6 80 58.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.3e-14 82.0 58 70.7
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.6e-14 81.3 55 65.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 8.9e-12 73.9 45 68.9
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.7e-10 69.7 96 37.5
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 7.3e-06 54.3 79 43.0


User provided reference genes

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