Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 7.0e-42 173.7 99 100.0
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 2.6e-28 128.6 101 76.2
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 3.4e-28 128.3 99 66.7
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 3.4e-28 128.3 99 68.7
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 4.4e-28 127.9 101 66.3
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 5.7e-28 127.5 99 64.6
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 5.7e-28 127.5 99 64.6
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 7.5e-28 127.1 97 63.9
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 3.7e-27 124.8 99 65.7
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 4.9e-27 124.4 99 66.7
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 4.9e-27 124.4 102 66.7
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 6.4e-27 124.0 99 66.7
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 8.3e-27 123.6 99 63.6
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.1e-26 123.2 99 64.6
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.1e-26 123.2 98 65.3
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 2.4e-26 122.1 99 65.7
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 7.0e-26 120.6 99 64.6
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 9.2e-26 120.2 99 61.6
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 9.2e-26 120.2 97 64.9
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 9.2e-26 120.2 97 64.9
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 9.2e-26 120.2 99 64.6
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.2e-25 119.8 99 64.6
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 1.6e-25 119.4 99 65.7
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.6e-25 119.4 99 64.6
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.6e-25 119.4 99 64.6
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 3.5e-25 118.2 100 62.0
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 3.5e-25 118.2 99 63.6
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 4.6e-25 117.9 99 63.6
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.9e-25 117.5 97 63.9
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 7.8e-25 117.1 99 65.7
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 7.8e-25 117.1 99 61.6
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 1.0e-24 116.7 99 60.6
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 1.3e-24 116.3 101 62.4
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 1.3e-24 116.3 97 60.8
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 1.3e-24 116.3 97 60.8
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 1.7e-24 115.9 99 63.6
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.3e-24 115.5 101 64.4
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 3.9e-24 114.8 97 63.9
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 6.6e-24 114.0 99 60.6
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 8.6e-24 113.6 99 63.6
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 8.6e-24 113.6 99 61.6
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 8.6e-24 113.6 97 61.9
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 1.5e-23 112.8 101 60.4
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 2.5e-23 112.1 101 63.4
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 2.5e-23 112.1 97 61.9
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 5.6e-23 110.9 99 57.6
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.2e-22 109.8 99 55.6
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.2e-22 109.8 88 68.2
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 2.8e-22 108.6 99 55.6
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 2.8e-22 108.6 99 67.7
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 3.6e-22 108.2 99 59.6
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.2e-22 107.5 56 89.3
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 8.0e-22 107.1 57 89.5
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 8.0e-22 107.1 57 89.5
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 8.0e-22 107.1 89 66.3
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.1e-21 106.7 97 61.9
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 1.4e-21 106.3 99 58.6
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 1.4e-21 106.3 99 53.5
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 2.3e-21 105.5 99 53.5
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 3.1e-21 105.1 99 54.5
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 3.1e-21 105.1 54 90.7
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 4.0e-21 104.8 99 59.6
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 4.0e-21 104.8 96 59.4
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 6.8e-21 104.0 99 52.5
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 6.8e-21 104.0 57 86.0
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 6.8e-21 104.0 55 89.1
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 8.9e-21 103.6 100 57.0
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 2.6e-20 102.1 54 85.2
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 4.4e-20 101.3 96 63.5
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 4.4e-20 101.3 98 54.1
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 4.4e-20 101.3 99 54.5
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 7.5e-20 100.5 96 55.2
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 9.8e-20 100.1 98 52.0
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 9.8e-20 100.1 99 64.6
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 9.8e-20 100.1 98 55.1
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 1.3e-19 99.8 99 53.5
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 1.3e-19 99.8 100 55.0
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 1.3e-19 99.8 100 55.0
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 1.3e-19 99.8 100 55.0
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 1.7e-19 99.4 86 60.5
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 2.9e-19 98.6 84 61.9
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 6.4e-19 97.4 98 52.0
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 8.3e-19 97.1 98 52.0
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 8.3e-19 97.1 98 52.0
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 8.3e-19 97.1 95 53.7
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 8.3e-19 97.1 88 61.4
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 1.1e-18 96.7 101 54.5
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.9e-18 95.9 87 63.2
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 3.2e-18 95.1 87 62.1
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 5.4e-18 94.4 99 52.5
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 5.4e-18 94.4 87 62.1
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 7.0e-18 94.0 99 51.5
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 7.0e-18 94.0 99 51.5
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 4.6e-17 91.3 86 55.8
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 3.9e-16 88.2 87 52.9
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 6.6e-16 87.4 88 58.0
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 1.9e-15 85.9 88 58.0
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 4.3e-15 84.7 82 53.7
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 9.5e-15 83.6 84 58.3
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 9.5e-15 83.6 83 54.2
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 2.1e-14 82.4 50 82.0
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 2.8e-14 82.0 82 54.9
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 4.7e-14 81.3 70 61.4
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 6.2e-14 80.9 43 86.0
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 8.9e-13 77.0 44 81.8
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 1.5e-12 76.3 73 56.2
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 2.6e-12 75.5 45 77.8
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 2.6e-12 75.5 49 73.5
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 3.4e-12 75.1 42 83.3
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.5e-07 57.0 39 74.4
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.5e-07 57.0 39 74.4


User provided reference genes

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