Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 4.7e-163 577.8 289 100.0
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 4.0e-114 415.2 272 75.7
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.2e-112 409.5 267 78.3
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 3.8e-112 408.7 274 75.9
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 6.4e-112 407.9 269 76.2
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.4e-112 407.9 267 77.5
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 6.4e-112 407.9 271 74.9
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 8.4e-112 407.5 269 74.7
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.1e-111 407.1 274 75.5
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.4e-111 406.8 280 73.6
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.9e-111 406.4 274 75.2
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 2.4e-111 406.0 267 77.5
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 7.1e-111 404.4 267 75.7
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.2e-110 403.7 272 75.0
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.6e-110 403.3 291 70.1
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.1e-110 402.9 267 76.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 2.1e-110 402.9 275 72.7
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.7e-110 402.5 267 76.8
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 2.7e-110 402.5 269 74.7
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 4.6e-110 401.7 269 74.3
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 6.0e-110 401.4 274 74.8
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 1.3e-109 400.2 269 74.3
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.8e-109 399.8 269 74.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.3e-109 399.4 269 74.0
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 2.3e-109 399.4 283 71.4
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 3.0e-109 399.1 269 72.9
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 8.7e-109 397.5 225 84.4
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 8.7e-109 397.5 269 74.0
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 3.3e-108 395.6 269 73.2
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.3e-108 395.2 269 73.6
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 2.1e-107 392.9 273 72.5
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.8e-107 392.5 269 72.1
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 2.8e-107 392.5 289 70.2
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 3.7e-107 392.1 270 72.2
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 4.8e-107 391.7 266 74.8
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 4.8e-107 391.7 223 85.2
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.8e-107 391.7 253 74.7
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 6.2e-107 391.3 227 83.7
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.1e-106 390.6 269 72.1
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.4e-106 390.2 234 79.1
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.8e-106 389.8 268 73.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.1e-106 389.0 277 70.4
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 3.1e-106 389.0 223 84.3
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 3.1e-106 389.0 246 77.6
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 6.9e-106 387.9 274 71.5
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 9.0e-106 387.5 272 71.7
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.5e-105 386.7 277 70.0
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 2.0e-105 386.3 267 71.9
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 2.6e-105 386.0 263 73.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 4.5e-105 385.2 223 83.9
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 5.8e-105 384.8 271 70.1
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 9.9e-105 384.0 264 73.9
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 9.9e-105 384.0 263 73.4
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-104 383.6 263 73.4
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.3e-104 383.6 269 71.0
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 4.9e-104 381.7 240 76.2
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 6.4e-104 381.3 223 83.9
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 6.4e-104 381.3 269 70.6
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 8.4e-104 380.9 272 71.0
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.4e-103 380.2 264 73.1
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-103 380.2 264 73.1
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.4e-103 380.2 274 69.7
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 1.9e-103 379.8 274 70.8
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.5e-103 379.4 269 70.3
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.2e-103 378.6 263 72.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 5.5e-103 378.3 250 73.6
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 7.1e-103 377.9 225 80.0
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 9.3e-103 377.5 280 68.9
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 1.2e-102 377.1 267 71.2
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.1e-102 376.3 263 71.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 2.7e-102 375.9 224 82.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.8e-101 373.2 223 81.2
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 1.8e-101 373.2 223 80.3
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 3.3e-100 369.0 271 70.5
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 7.4e-100 367.9 248 73.8
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.6e-99 366.7 275 68.7
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 2.1e-99 366.3 264 69.3
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 3.7e-99 365.5 252 71.4
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 6.9e-98 361.3 224 76.3
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 9.0e-98 360.9 315 62.9
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.2e-96 356.3 309 62.8
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.9e-96 355.9 227 77.1
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.1e-94 349.7 300 62.7
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 6.0e-94 348.2 224 75.0
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 2.5e-92 342.8 243 68.3
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 4.8e-91 338.6 276 65.9
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 5.3e-90 335.1 267 65.2
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 5.3e-90 335.1 208 76.9
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.0e-85 320.9 237 68.4
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.3e-85 319.7 240 61.7
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.3e-85 319.7 240 61.7
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 1.8e-82 310.1 269 59.9
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 3.1e-82 309.3 233 62.7
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 3.8e-80 302.4 244 67.2
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 3.8e-80 302.4 223 63.2
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.1e-76 290.8 223 66.4
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 3.6e-70 269.2 204 66.7
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.8e-66 256.9 245 58.4
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.0e-64 251.1 233 51.5
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.5e-63 247.3 202 62.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.2e-63 245.7 141 85.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 8.0e-62 241.5 235 48.5
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 2.6e-52 209.9 239 47.3
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 8.3e-51 204.9 150 70.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 8.3e-51 204.9 183 62.8
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 4.2e-47 192.6 278 42.4
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.2e-46 191.0 171 55.6
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.1e-46 190.3 129 74.4
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.2e-33 147.9 144 56.2
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 1.6e-30 137.5 80 76.2
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 4.7e-30 136.0 80 75.0
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 6.8e-29 132.1 188 42.0
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.8e-28 129.0 222 34.2
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.6e-25 120.9 88 69.3
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.1e-24 115.9 102 58.8
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.2e-20 104.8 183 39.9
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 6.4e-19 99.0 91 57.1
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-17 94.7 45 88.9
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-17 94.7 45 88.9
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 3.5e-17 93.2 57 77.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.9e-15 87.4 70 64.3
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-13 81.3 53 75.5
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 8.9e-13 78.6 64 59.4
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 5.8e-12 75.9 49 77.6
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 3.0e-08 63.5 244 25.4
BraA03t15233Z Brassica rapa HOM05D001625 ORTHO05D008114 1.5e-07 61.2 249 26.1
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 1.5e-07 61.2 244 25.4
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 2.5e-07 60.5 240 26.2
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 2.5e-07 60.5 253 26.1
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 4.3e-07 59.7 239 24.7
A03p61940 Brassica napus HOM05D001625 ORTHO05D008114 7.3e-07 58.9 249 25.7
arahy.Tifrunner.gnm1.ann1.GU4KEX Arachis hypogaea HOM05D001625 ORTHO05D008114 9.6e-07 58.5 240 25.8
Ca_15956_v3 Cicer arietinum L. HOM05D001625 ORTHO05D008114 9.6e-07 58.5 241 24.5
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 9.6e-07 58.5 244 27.0
FAN20G1997 Fragaria x ananassa HOM05D001625 ORTHO05D008114 1.3e-06 58.2 256 22.7
Glyma.06G038700 Glycine max HOM05D001625 ORTHO05D008114 1.6e-06 57.8 244 27.5
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 2.8e-06 57.0 241 24.5
BcaNung02168 Brassica carinata HOM05D001625 ORTHO05D008114 4.8e-06 56.2 244 23.4
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 6.2e-06 55.8 225 25.3


User provided reference genes

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