Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 6.3e-71 270.8 148 100.0
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 1.8e-54 216.1 150 82.7
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 2.7e-53 212.2 150 78.7
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 4.5e-53 211.5 151 81.5
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 1.0e-52 210.3 150 79.3
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 1.0e-52 210.3 149 79.2
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 1.0e-52 210.3 150 80.7
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 2.9e-52 208.8 149 78.5
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 2.9e-52 208.8 150 79.3
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 2.9e-52 208.8 149 79.9
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 2.9e-52 208.8 150 78.0
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 3.8e-52 208.4 150 80.0
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 5.0e-52 208.0 149 79.2
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 5.0e-52 208.0 149 77.9
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 8.5e-52 207.2 150 79.3
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 8.5e-52 207.2 149 79.2
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 8.5e-52 207.2 149 79.2
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 8.5e-52 207.2 147 78.2
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.1e-51 206.8 149 79.2
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 1.5e-51 206.5 159 76.1
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 1.5e-51 206.5 147 77.6
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 2.5e-51 205.7 151 78.8
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 3.2e-51 205.3 149 75.8
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 4.2e-51 204.9 149 77.2
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 4.2e-51 204.9 149 75.8
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 4.2e-51 204.9 149 77.2
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 9.4e-51 203.8 149 77.2
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 1.2e-50 203.4 149 78.5
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 1.2e-50 203.4 149 76.5
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 1.6e-50 203.0 147 78.2
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 2.1e-50 202.6 149 77.9
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 2.1e-50 202.6 149 77.9
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 2.7e-50 202.2 150 78.0
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 2.7e-50 202.2 149 77.9
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 6.1e-50 201.1 149 75.2
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 1.4e-49 199.9 149 75.2
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 2.3e-49 199.1 149 76.5
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 2.3e-49 199.1 150 74.7
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 2.3e-49 199.1 149 74.5
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 2.3e-49 199.1 148 78.4
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 3.0e-49 198.7 150 74.7
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 3.0e-49 198.7 148 78.4
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 3.0e-49 198.7 149 78.5
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 8.8e-49 197.2 150 78.7
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 1.2e-48 196.8 151 74.2
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 2.0e-48 196.1 149 75.8
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 2.6e-48 195.7 148 75.0
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 3.4e-48 195.3 149 74.5
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 4.4e-48 194.9 149 73.8
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 5.7e-48 194.5 150 75.3
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 9.8e-48 193.7 149 73.2
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 1.7e-47 193.0 149 71.1
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 2.2e-47 192.6 149 74.5
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 2.2e-47 192.6 149 71.8
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 2.8e-47 192.2 149 73.8
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 2.8e-47 192.2 149 72.5
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 3.7e-47 191.8 151 70.2
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 3.7e-47 191.8 149 75.2
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 3.7e-47 191.8 146 74.0
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 4.8e-47 191.4 147 74.8
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 4.8e-47 191.4 149 73.8
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 4.8e-47 191.4 150 76.7
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 4.8e-47 191.4 149 70.5
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 6.3e-47 191.0 149 69.8
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 8.3e-47 190.7 149 73.8
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 1.1e-46 190.3 149 71.8
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 1.4e-46 189.9 149 73.2
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 1.4e-46 189.9 158 70.9
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 1.4e-46 189.9 149 68.5
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 1.4e-46 189.9 150 73.3
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 2.4e-46 189.1 146 73.3
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 3.1e-46 188.7 147 72.8
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 5.4e-46 188.0 148 70.3
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 5.4e-46 188.0 148 71.6
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 7.0e-46 187.6 148 73.0
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 7.0e-46 187.6 146 73.3
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 7.0e-46 187.6 150 71.3
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 9.1e-46 187.2 147 72.1
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 1.6e-45 186.4 148 70.3
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 5.9e-45 184.5 148 72.3
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 7.7e-45 184.1 109 89.9
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 1.0e-44 183.7 150 68.0
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 1.7e-44 183.0 144 73.6
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 5.0e-44 181.4 147 69.4
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 5.0e-44 181.4 147 69.4
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 6.5e-44 181.0 148 70.3
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 1.1e-43 180.3 157 66.9
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 3.3e-43 178.7 111 83.8
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 2.8e-42 175.6 170 62.4
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 3.6e-42 175.3 150 64.7
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 4.7e-42 174.9 160 64.4
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 6.1e-42 174.5 100 91.0
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 6.8e-41 171.0 158 63.3
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 8.9e-41 170.6 157 65.0
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 2.6e-40 169.1 99 89.9
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 9.8e-40 167.2 147 62.6
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 9.8e-40 167.2 150 64.7
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 4.9e-39 164.9 149 67.8
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 8.3e-39 164.1 171 61.4
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 3.1e-38 162.2 99 84.8
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 7.0e-38 161.0 160 60.6
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 7.0e-38 161.0 99 83.8
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 7.0e-38 161.0 99 83.8
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 5.9e-37 157.9 98 82.7
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 6.6e-36 154.5 238 47.5
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 1.5e-35 153.3 121 64.5
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 1.2e-34 150.2 120 61.7
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 6.1e-34 147.9 110 75.5
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 6.8e-33 144.4 151 53.6
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 1.2e-32 143.7 114 64.0
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 9.5e-27 124.0 118 59.3
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 1.6e-26 123.2 150 48.0
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 4.0e-25 118.6 98 60.2
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 3.7e-23 112.1 100 66.0
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 3.0e-20 102.4 91 61.5
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 3.1e-17 92.4 149 44.3
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 5.2e-17 91.7 134 41.8
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 5.8e-16 88.2 125 36.8
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 5.4e-14 81.6 59 74.6
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 2.1e-13 79.7 149 41.6
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 2.1e-10 69.7 41 90.2


User provided reference genes

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