Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 0.0e+00 1758.8 1102 100.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 6.0e-243 845.1 1104 63.3
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 5.7e-225 785.4 1087 61.1
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 2.1e-211 740.3 1192 56.4
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 4.7e-203 712.6 1118 55.9
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 6.1e-195 685.6 1101 56.8
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 2.3e-194 683.7 1191 54.4
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 6.7e-194 682.2 1062 59.6
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 7.5e-193 678.7 1108 56.4
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.1e-191 674.9 1117 57.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.4e-191 674.5 1094 57.2
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-187 661.4 1097 55.7
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.0e-186 656.4 1139 55.3
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 3.4e-185 653.3 1054 58.6
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 2.8e-184 650.2 1092 56.3
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.7e-184 649.8 1137 55.3
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 7.7e-182 642.1 1130 53.9
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 7.2e-180 635.6 1142 53.0
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 4.0e-178 629.8 1091 55.3
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 1.5e-177 627.9 1174 47.5
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 3.4e-177 626.7 1110 53.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.4e-177 626.7 1118 55.5
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.4e-169 600.1 1131 49.5
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 4.4e-169 599.7 1099 54.3
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 2.9e-168 597.0 1091 53.8
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 3.7e-168 596.7 1115 52.6
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.7e-166 590.5 1130 53.0
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.5e-164 583.9 1102 52.9
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 3.3e-164 583.6 1114 53.1
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.3e-164 583.2 1100 51.6
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 5.8e-161 572.8 1086 52.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.7e-160 570.1 1105 51.9
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 9.2e-159 565.5 1054 52.8
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 1.0e-157 562.0 814 63.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 3.3e-156 557.0 1126 50.8
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 6.2e-155 552.7 1108 45.3
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 6.2e-155 552.7 1085 52.0
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.8e-154 551.2 814 62.4
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 2.3e-154 550.8 1175 50.3
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 2.2e-152 544.3 1088 52.0
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 3.7e-152 543.5 1126 50.6
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 4.9e-152 543.1 827 58.3
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 6.4e-152 542.7 1120 50.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.9e-151 541.2 1118 51.3
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.0e-149 535.4 1179 49.4
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 2.3e-149 534.3 1092 51.3
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 1.5e-148 531.6 1205 49.1
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.2e-147 528.5 1130 48.8
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 2.8e-147 527.3 1124 51.0
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 1.4e-146 525.0 1127 50.1
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.8e-146 524.6 1097 50.0
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 8.9e-146 522.3 1119 48.8
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.5e-145 521.5 1120 49.2
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.7e-144 518.1 1122 49.9
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 6.4e-144 516.2 1115 50.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 8.4e-144 515.8 1114 50.5
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 3.2e-143 513.8 1134 49.5
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.6e-142 510.0 1131 50.0
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 7.8e-142 509.2 1043 51.6
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-141 508.4 1200 48.1
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.7e-141 508.1 1201 48.0
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 6.6e-141 506.1 1126 47.2
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 5.8e-137 493.0 992 50.1
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 7.6e-137 492.7 1132 50.2
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 4.9e-136 490.0 606 70.8
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.9e-135 488.0 906 49.1
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 2.4e-135 487.6 1104 50.0
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 4.2e-135 486.9 1109 48.2
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 5.4e-135 486.5 1158 48.4
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 4.6e-134 483.4 1118 48.8
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 6.6e-133 479.6 1117 47.7
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 3.3e-132 477.2 1098 49.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 5.6e-132 476.5 1088 50.1
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.3e-131 475.3 744 57.4
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 4.0e-130 470.3 701 65.6
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 6.9e-130 469.5 1119 47.7
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.2e-128 464.5 1156 48.2
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.9e-128 463.4 814 57.7
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.9e-127 461.5 1120 48.2
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.1e-127 459.5 815 57.5
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 9.3e-127 459.1 1128 48.5
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 8.7e-125 452.6 772 58.7
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 5.6e-124 449.9 1122 46.9
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 9.6e-124 449.1 1115 47.2
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.8e-122 444.9 1164 46.4
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.2e-121 442.2 826 58.1
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 8.4e-120 436.0 1183 45.9
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 8.4e-120 436.0 1079 48.7
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 2.7e-118 431.0 919 52.3
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 3.5e-118 430.6 1179 45.4
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 6.0e-118 429.9 1170 44.9
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 8.1e-115 419.5 705 61.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 2.0e-113 414.8 698 57.6
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.6e-107 395.2 1145 40.1
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 8.2e-91 339.7 740 50.0
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 5.5e-87 327.0 1014 47.4
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 7.2e-79 300.1 262 56.9
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.6e-65 255.8 720 45.3
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.5e-63 248.4 340 74.1
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 3.6e-62 244.6 729 46.0
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 2.3e-61 241.9 164 72.6
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 3.7e-59 234.6 288 85.4
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 2.9e-51 208.4 666 45.3
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 1.2e-46 193.0 257 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 8.0e-46 190.3 688 50.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.4e-44 184.5 123 74.0
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 5.4e-42 177.6 298 66.1
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.0e-40 173.3 703 37.8
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.6e-39 167.5 286 38.1
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 4.0e-37 161.4 269 38.7
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 3.4e-36 158.3 278 37.4
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.2e-35 155.6 247 81.8
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 4.1e-34 151.4 693 47.5
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.1e-34 150.6 128 60.9
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.9e-31 142.5 120 57.5
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 8.1e-30 137.1 665 43.9
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.1e-29 136.7 121 57.9
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 2.0e-28 132.5 279 31.5
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 4.1e-26 124.8 106 58.5
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 2.5e-23 115.5 109 56.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.8e-21 109.4 94 55.3
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.5e-17 95.1 100 75.0
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 1.0e-16 93.6 246 30.5
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.9e-07 62.8 112 35.7
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 5.6e-07 61.2 115 27.8
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 5.6e-07 61.2 115 27.8
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 7.4e-07 60.8 109 28.4
SMO286G0011 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 2.1e-06 59.3 61 47.5


User provided reference genes

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