Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 4007.6 2015 100.0
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1825.4 2082 49.6
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1747.6 2093 48.0
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1732.2 2070 47.4
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1722.6 2121 46.2
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1711.0 2124 45.9
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1694.1 2140 45.9
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1686.4 2132 46.0
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 0.0e+00 1684.1 2031 47.5
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 0.0e+00 1670.6 2085 46.5
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1661.0 2081 46.4
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1647.9 2086 45.7
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1624.0 2077 44.6
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 0.0e+00 1601.6 2066 45.8
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1594.3 2040 44.5
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1592.8 2075 44.1
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1580.8 2086 44.1
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1573.5 2150 43.5
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1572.0 2133 44.1
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1570.1 2068 43.7
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1557.7 2139 42.5
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1547.3 2129 42.9
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1543.9 2022 44.4
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1543.5 2024 44.2
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1531.5 2038 43.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1521.1 2144 42.3
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1516.5 2023 43.7
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 0.0e+00 1504.2 2090 43.8
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1501.5 2128 42.0
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 0.0e+00 1495.7 2029 44.0
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1488.8 2101 41.7
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1483.4 1987 43.9
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 0.0e+00 1480.3 2027 43.9
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 0.0e+00 1477.2 2031 43.3
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 0.0e+00 1469.9 1738 48.5
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1439.9 2069 41.9
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1434.5 2100 41.2
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1431.4 2121 41.2
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1428.3 2166 40.1
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 0.0e+00 1423.3 2034 43.1
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1421.0 2079 40.8
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1415.6 2073 40.8
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1403.7 2073 41.0
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1377.1 2036 40.6
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1364.0 2083 40.1
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 0.0e+00 1362.4 2086 41.2
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 0.0e+00 1348.2 1719 46.0
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1334.7 2028 39.2
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 0.0e+00 1332.0 2032 40.8
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 0.0e+00 1327.4 2058 39.2
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1317.4 2013 39.9
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 0.0e+00 1304.7 2098 39.1
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 0.0e+00 1289.2 2067 38.6
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 0.0e+00 1279.2 2107 38.6
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 0.0e+00 1276.2 2023 39.2
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 0.0e+00 1275.0 2125 38.4
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 0.0e+00 1267.3 2046 39.1
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 0.0e+00 1265.0 2124 38.0
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 0.0e+00 1264.2 2048 38.4
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 0.0e+00 1254.6 2008 38.2
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 0.0e+00 1253.8 2110 38.3
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 0.0e+00 1252.7 2004 38.7
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 0.0e+00 1244.2 2019 38.8
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 0.0e+00 1239.6 2110 37.8
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 0.0e+00 1232.2 2076 38.2
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 0.0e+00 1217.2 2027 37.9
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 0.0e+00 1200.3 2028 37.9
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 0.0e+00 1185.6 2012 37.4
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 0.0e+00 1183.3 2051 37.5
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 0.0e+00 1169.1 2074 37.2
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 0.0e+00 1163.7 2013 37.7
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 0.0e+00 1163.3 2018 37.2
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 0.0e+00 1140.2 2046 36.2
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 1139.4 2004 36.7
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 0.0e+00 1133.6 1530 42.7
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 1131.7 1993 36.7
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 0.0e+00 1129.0 2047 36.0
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 0.0e+00 1115.9 2099 36.0
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 0.0e+00 1115.1 2032 36.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 0.0e+00 1112.1 2032 36.1
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 0.0e+00 1109.7 2032 36.0
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 0.0e+00 1109.7 2032 36.0
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 0.0e+00 1104.7 2077 35.7
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 0.0e+00 1088.9 2168 35.3
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 1.8e-306 1057.0 1976 35.5
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 5.9e-289 998.8 2081 33.8
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.2e-275 953.7 1627 37.4
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 1.9e-274 950.7 1404 42.4
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-272 944.5 1504 38.8
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 3.5e-257 893.3 2061 32.8
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 6.2e-246 855.9 2081 31.6
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.7e-233 813.9 1628 35.1
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 4.5e-228 796.6 1460 36.2
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.7e-195 688.3 2022 28.2
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 5.4e-181 640.2 1064 37.1
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 4.0e-152 544.3 780 42.1
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.7e-150 538.9 702 43.3
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-147 529.6 521 53.4
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 2.9e-134 485.0 2322 24.6
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 6.0e-132 477.2 1278 28.8
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 9.9e-127 459.9 998 33.4
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 8.4e-126 456.8 759 38.9
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 9.3e-125 453.4 2242 23.1
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 2.4e-120 438.7 2164 23.7
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 3.0e-91 342.0 674 35.0
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 8.8e-83 313.9 1186 26.3
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 9.7e-82 310.5 286 55.6
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 1.0e-75 290.4 583 34.6
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 1.0e-70 273.9 388 41.0
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 1.8e-64 253.1 660 33.0
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-63 250.4 418 35.6
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 1.8e-59 236.5 171 63.7
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 3.1e-59 235.7 496 35.7
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 2.4e-56 226.1 1693 21.6
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.4e-48 200.3 392 32.9
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 3.1e-43 182.6 730 26.8
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 2.1e-39 169.9 345 33.9
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 1.4e-35 157.1 246 37.8
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 3.8e-33 149.1 199 40.7
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 6.4e-33 148.3 112 59.8
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 1.1e-32 147.5 404 32.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 3.5e-31 142.5 217 41.5
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 6.0e-31 141.7 115 57.4
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 3.9e-30 139.0 104 58.7
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 2.1e-28 133.3 106 61.3
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 6.2e-28 131.7 327 26.3
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 1.2e-26 127.5 93 61.3
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-26 127.5 183 39.3
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.5e-26 127.1 93 62.4
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 1.5e-26 127.1 93 62.4
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.0e-26 126.7 138 46.4
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 7.6e-26 124.8 88 61.4
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 8.7e-22 111.3 83 63.9
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 3.3e-21 109.4 320 28.8
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 1.3e-17 97.4 122 45.1
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-17 97.4 298 26.5
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 3.8e-17 95.9 108 45.4
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 7.1e-16 91.7 136 40.4
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 1.6e-15 90.5 170 38.2
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 7.9e-15 88.2 95 46.3
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 3.9e-14 85.9 286 24.8
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 2.5e-13 83.2 55 63.6
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 4.3e-13 82.4 78 55.1
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 1.3e-12 80.9 112 42.0
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 1.4e-11 77.4 51 64.7
RcHm_v2.0_Chr6g0244931 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-10 72.4 69 50.7
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 1.1e-08 67.8 116 37.1
MD10G1117400 Malus domestica HOM05D004890 ORTHO05D005869 7.1e-08 65.1 79 43.0


User provided reference genes

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