Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.8e-168 595.9 309 100.0
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.3e-118 430.3 316 70.9
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 2.7e-116 422.5 317 69.4
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 6.6e-115 417.9 308 65.3
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 9.0e-112 407.5 320 67.2
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.2e-111 407.1 311 61.4
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.0e-111 406.4 315 68.9
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.6e-111 406.0 329 66.9
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 3.4e-111 405.6 324 65.1
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 5.8e-111 404.8 321 66.7
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 9.9e-111 404.1 309 63.4
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 9.9e-111 404.1 336 64.6
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 9.9e-111 404.1 324 66.4
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 3.8e-110 402.1 311 60.5
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 8.4e-110 401.0 317 65.9
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 5.4e-109 398.3 321 67.9
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.6e-108 396.7 323 65.9
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.3e-107 393.7 318 65.7
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 5.1e-107 391.7 316 66.8
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 5.6e-106 388.3 313 67.4
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 8.1e-105 384.4 317 64.7
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 1.1e-104 384.0 302 64.2
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 4.0e-104 382.1 318 65.1
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.0e-104 382.1 379 52.5
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 9.0e-104 380.9 345 61.7
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.4e-103 379.0 312 59.9
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.3e-102 377.1 330 62.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 6.5e-102 374.8 332 61.4
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.1e-101 374.0 317 63.1
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.5e-101 372.9 313 62.0
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.1e-101 371.3 308 58.4
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.2e-100 370.5 303 64.0
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.7e-100 369.4 316 62.7
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.0e-99 367.5 291 67.0
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.9e-99 365.5 344 57.6
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 5.1e-99 365.2 360 56.7
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 6.7e-99 364.8 321 62.6
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 1.1e-98 364.0 316 59.5
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 3.3e-98 362.5 311 60.5
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 9.6e-98 360.9 311 60.1
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 9.6e-98 360.9 314 63.7
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.8e-97 359.4 327 60.6
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 8.2e-97 357.8 310 57.7
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.8e-96 356.7 331 59.8
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.4e-96 356.3 309 59.5
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 6.9e-96 354.8 325 61.5
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 6.9e-96 354.8 332 58.4
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.5e-95 353.6 341 58.4
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.4e-95 352.4 347 55.9
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.4e-95 352.4 351 57.0
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 5.8e-95 351.7 334 59.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 7.6e-95 351.3 315 61.0
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 7.6e-95 351.3 319 58.3
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.0e-94 350.9 313 59.4
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.2e-94 349.7 348 56.6
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 2.2e-94 349.7 321 58.9
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 6.5e-94 348.2 311 62.4
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.2e-92 344.0 334 60.2
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 4.6e-92 342.0 344 53.2
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.0e-91 340.9 254 69.7
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 1.3e-91 340.5 315 61.6
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 2.3e-91 339.7 313 60.1
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 3.9e-91 339.0 316 57.3
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.9e-90 336.7 301 58.5
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 2.5e-90 336.3 323 57.0
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 9.7e-90 334.3 315 55.6
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 2.8e-89 332.8 348 56.6
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.6e-87 326.2 300 54.7
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 4.5e-87 325.5 327 52.3
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.6e-84 317.0 316 55.1
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.6e-84 315.8 315 54.9
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.0e-83 314.3 314 53.5
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 8.8e-83 311.2 312 57.1
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 2.5e-82 309.7 314 55.1
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.3e-82 309.3 304 51.0
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 7.4e-82 308.1 346 48.3
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 7.4e-82 308.1 336 55.4
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 7.4e-82 308.1 336 55.4
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 1.3e-81 307.4 336 55.4
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.3e-81 307.4 344 52.3
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-81 307.0 301 50.5
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-81 307.0 301 50.8
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 1.1e-80 304.3 344 51.7
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.8e-80 303.5 319 50.8
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.3e-80 302.0 294 57.8
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 6.9e-80 301.6 344 53.2
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.6e-79 299.7 346 49.7
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 2.6e-79 299.7 336 50.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.3e-78 297.4 346 49.1
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.3e-78 297.4 346 49.1
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.3e-78 297.4 346 49.1
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.7e-78 297.0 319 52.0
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.9e-78 296.2 324 53.7
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 2.9e-78 296.2 346 49.1
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 7.9e-76 288.1 327 52.6
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 5.1e-75 285.4 343 48.4
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.1e-74 284.3 376 44.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 1.5e-74 283.9 331 52.6
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 2.0e-74 283.5 379 47.0
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 3.3e-74 282.7 354 49.2
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.3e-74 282.7 333 46.5
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 9.7e-74 281.2 301 48.2
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.7e-73 280.4 300 49.0
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.7e-73 279.3 310 51.9
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 5.2e-67 258.8 290 47.9
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.7e-67 258.5 257 58.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 2.2e-65 253.4 317 44.8
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 8.2e-65 251.5 196 70.4
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 8.2e-65 251.5 307 44.6
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.2e-59 232.3 331 41.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.0e-55 220.3 310 41.9
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 6.5e-54 215.3 272 48.9
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.6e-50 203.4 212 49.5
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.8e-48 197.2 390 33.8
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 7.0e-48 195.3 320 38.4
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 1.2e-47 194.5 127 70.1
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 5.7e-42 175.6 128 57.8
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 6.6e-38 162.2 297 36.7
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 5.6e-37 159.1 140 52.9
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.8e-36 156.8 145 56.6
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 2.7e-31 140.2 299 31.4
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.3e-29 133.3 288 29.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.2e-28 131.3 311 29.9
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 1.8e-27 127.5 136 46.3
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 2.9e-25 120.2 315 29.2
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.6e-23 112.8 112 46.4
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.6e-18 97.1 217 36.4
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 4.4e-18 96.3 164 38.4
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 4.7e-12 76.3 54 64.8
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.1e-07 60.8 86 41.9
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 3.9e-06 56.6 111 38.7


User provided reference genes

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