Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 5.6e-108 394.4 220 100.0
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.5e-57 226.9 207 57.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.7e-56 223.4 211 55.0
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 2.9e-56 222.6 205 55.6
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.4e-55 220.3 209 55.0
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 9.4e-55 217.6 212 54.2
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 4.4e-52 208.8 208 53.8
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 9.7e-52 207.6 193 55.4
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 3.7e-51 205.7 211 51.7
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 2.4e-50 203.0 208 52.4
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 7.0e-50 201.4 204 52.9
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 2.0e-49 199.9 202 55.4
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 5.9e-49 198.4 209 51.7
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 5.9e-49 198.4 203 51.2
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 7.7e-49 198.0 198 52.5
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.7e-48 196.8 197 53.8
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 3.8e-48 195.7 193 54.4
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 5.0e-48 195.3 189 52.4
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 8.5e-48 194.5 207 51.7
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-47 194.1 189 51.9
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.5e-47 193.7 189 51.9
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.9e-47 193.4 189 52.9
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.9e-47 193.4 209 51.2
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.2e-47 192.6 202 54.5
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 3.2e-47 192.6 207 50.2
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 4.2e-47 192.2 199 52.3
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 5.5e-47 191.8 206 51.0
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 5.5e-47 191.8 209 50.7
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 7.2e-47 191.4 210 51.4
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.6e-46 190.3 198 52.5
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.7e-46 188.7 192 51.0
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 1.4e-45 187.2 191 50.3
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 4.0e-45 185.7 207 50.2
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 8.8e-45 184.5 195 48.7
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.2e-44 184.1 198 50.0
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.2e-44 184.1 209 48.3
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.5e-44 183.7 209 48.3
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.5e-44 183.7 175 52.6
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 4.4e-44 182.2 185 53.0
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 4.4e-44 182.2 185 52.4
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 5.7e-44 181.8 222 46.4
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.7e-43 180.3 184 50.5
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 2.2e-43 179.9 196 49.5
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 4.8e-43 178.7 209 46.9
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 8.2e-43 177.9 202 49.5
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 8.2e-43 177.9 200 49.5
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 1.1e-42 177.6 217 43.8
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 1.4e-42 177.2 195 46.2
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.8e-42 176.8 208 46.2
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.4e-42 176.4 212 49.1
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 3.1e-42 176.0 183 53.6
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 7.0e-42 174.9 193 50.3
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 9.1e-42 174.5 207 47.8
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 5.9e-41 171.8 206 48.5
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 3.8e-40 169.1 200 48.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 4.2e-39 165.6 204 46.1
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 9.4e-39 164.5 197 46.7
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 6.1e-38 161.8 205 46.3
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.4e-37 160.6 185 46.5
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.8e-37 160.2 199 49.7
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 4.0e-37 159.1 219 43.4
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 5.2e-37 158.7 186 50.0
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 5.2e-37 158.7 209 46.9
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.2e-36 157.5 198 49.5
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 1.5e-36 157.1 201 43.3
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.0e-36 156.8 198 48.5
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 3.4e-36 156.0 204 44.1
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 5.7e-36 155.2 199 48.2
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.7e-36 155.2 203 42.4
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.7e-35 153.7 205 44.4
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 2.2e-35 153.3 203 42.4
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 6.3e-35 151.8 203 41.9
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 2.4e-34 149.8 207 43.0
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.1e-34 149.4 180 49.4
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 4.1e-34 149.1 211 44.5
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 5.4e-34 148.7 199 44.2
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 2.7e-33 146.4 180 48.9
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 4.5e-33 145.6 210 42.9
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 5.9e-33 145.2 130 56.9
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.3e-32 144.1 283 35.0
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.0e-32 142.1 210 39.0
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.5e-32 141.7 212 42.5
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 6.5e-32 141.7 212 42.5
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 8.5e-32 141.4 215 40.0
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.9e-31 140.2 202 40.6
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 4.7e-30 135.6 216 38.4
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 8.0e-30 134.8 215 38.6
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 1.0e-29 134.4 214 37.9
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-29 134.4 217 39.6
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.4e-29 134.0 220 37.7
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.8e-29 133.7 220 37.7
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.3e-29 133.3 215 38.1
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.3e-29 133.3 215 38.1
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 2.3e-29 133.3 207 43.0
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 3.0e-29 132.9 215 38.1
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 3.0e-29 132.9 192 38.5
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 6.8e-29 131.7 215 37.7
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 2.6e-28 129.8 214 36.4
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 3.4e-28 129.4 174 44.3
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 7.5e-28 128.3 151 49.0
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 8.3e-27 124.8 123 48.8
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 7.0e-26 121.7 129 49.6
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 5.9e-25 118.6 87 64.4
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.9e-24 116.3 148 45.9
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.1e-23 114.4 89 62.9
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.5e-23 114.0 90 58.9
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.8e-21 107.1 193 35.8
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 6.8e-21 105.1 184 35.3
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 6.8e-21 105.1 211 34.1
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.2e-20 104.4 90 55.6
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 1.2e-20 104.4 209 34.9
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 9.8e-20 101.3 211 35.1
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 1.2e-14 84.3 161 37.3
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 6.8e-13 78.6 66 59.1
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 8.9e-13 78.2 60 66.7
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 1.3e-11 74.3 66 60.6
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 7.0e-10 68.6 108 36.1
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 4.6e-09 65.9 59 55.9
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.3e-08 63.5 72 44.4


User provided reference genes

Program Settings